miRNA display CGI


Results 1 - 20 of 32 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8028 3' -58.5 NC_001973.1 + 62697 0.66 0.838236
Target:  5'- cGAGG-GCGGCGAcGAcgUCGCGAaaaacUUGCc -3'
miRNA:   3'- -CUCCgCGCCGCU-CU--AGCGCUc----AACGc -5'
8028 3' -58.5 NC_001973.1 + 35689 0.66 0.837433
Target:  5'- -cGGCGCGGUGGcggcgauGcgCGaCGAGgcGCGa -3'
miRNA:   3'- cuCCGCGCCGCU-------CuaGC-GCUCaaCGC- -5'
8028 3' -58.5 NC_001973.1 + 133279 0.66 0.821844
Target:  5'- -cGGcCGCGGcCGAGAaCGCGGccgGCGg -3'
miRNA:   3'- cuCC-GCGCC-GCUCUaGCGCUcaaCGC- -5'
8028 3' -58.5 NC_001973.1 + 95874 0.66 0.821844
Target:  5'- -cGGCGUGGuCGAcuacCGCGAGcUGCGc -3'
miRNA:   3'- cuCCGCGCC-GCUcua-GCGCUCaACGC- -5'
8028 3' -58.5 NC_001973.1 + 41226 0.66 0.813397
Target:  5'- -uGGCGCuuGGCGucGUCGCGcuuuuuGUUGCa -3'
miRNA:   3'- cuCCGCG--CCGCucUAGCGCu-----CAACGc -5'
8028 3' -58.5 NC_001973.1 + 10803 0.66 0.812543
Target:  5'- uAGGCgccgacgGCGGCGAGAaUCGCcacGAGgaGCa -3'
miRNA:   3'- cUCCG-------CGCCGCUCU-AGCG---CUCaaCGc -5'
8028 3' -58.5 NC_001973.1 + 133522 0.66 0.812543
Target:  5'- cGGGCaGCagaGGCGAGGgccgCGCGuaaucguAGUUGCGc -3'
miRNA:   3'- cUCCG-CG---CCGCUCUa---GCGC-------UCAACGC- -5'
8028 3' -58.5 NC_001973.1 + 5884 0.66 0.804792
Target:  5'- -uGGUGCGGCGcAGcgCGCGcGacGCGa -3'
miRNA:   3'- cuCCGCGCCGC-UCuaGCGCuCaaCGC- -5'
8028 3' -58.5 NC_001973.1 + 24123 0.67 0.787142
Target:  5'- uGAGcCG-GGCGAGcUCGCGGG-UGCGc -3'
miRNA:   3'- -CUCcGCgCCGCUCuAGCGCUCaACGC- -5'
8028 3' -58.5 NC_001973.1 + 55227 0.67 0.778112
Target:  5'- gGAGGCgGCGGCGGcGggCGgCGAGagGCc -3'
miRNA:   3'- -CUCCG-CGCCGCU-CuaGC-GCUCaaCGc -5'
8028 3' -58.5 NC_001973.1 + 121240 0.67 0.759685
Target:  5'- -cGGCGCGGCGc-GUCGCagaacaGGGUgGCGa -3'
miRNA:   3'- cuCCGCGCCGCucUAGCG------CUCAaCGC- -5'
8028 3' -58.5 NC_001973.1 + 122611 0.67 0.759685
Target:  5'- gGAGGCGuCGGCGGcgccGA-CGCGGGcgccgGCGu -3'
miRNA:   3'- -CUCCGC-GCCGCU----CUaGCGCUCaa---CGC- -5'
8028 3' -58.5 NC_001973.1 + 33971 0.67 0.750306
Target:  5'- --cGCuGCGGCGucauGAUCaGCGAGUugaUGCGg -3'
miRNA:   3'- cucCG-CGCCGCu---CUAG-CGCUCA---ACGC- -5'
8028 3' -58.5 NC_001973.1 + 105725 0.67 0.750306
Target:  5'- cAGGCGCGGCGccGUUuCGuGUUGCu -3'
miRNA:   3'- cUCCGCGCCGCucUAGcGCuCAACGc -5'
8028 3' -58.5 NC_001973.1 + 132447 0.68 0.740826
Target:  5'- gGAGGCGcCGGCGGGG-CGCGGccucGUcggGCu -3'
miRNA:   3'- -CUCCGC-GCCGCUCUaGCGCU----CAa--CGc -5'
8028 3' -58.5 NC_001973.1 + 120590 0.68 0.740826
Target:  5'- cGGGCGCGcCGAG-UCGCGG--UGCGc -3'
miRNA:   3'- cUCCGCGCcGCUCuAGCGCUcaACGC- -5'
8028 3' -58.5 NC_001973.1 + 74802 0.68 0.702088
Target:  5'- uGGGCGCGcacGCGAGG-CGCGucgUGCGc -3'
miRNA:   3'- cUCCGCGC---CGCUCUaGCGCucaACGC- -5'
8028 3' -58.5 NC_001973.1 + 132542 0.68 0.692241
Target:  5'- cGGGCGCGGCGGcGGgcucgagCGCGgcGGUgugGCGc -3'
miRNA:   3'- cUCCGCGCCGCU-CUa------GCGC--UCAa--CGC- -5'
8028 3' -58.5 NC_001973.1 + 94501 0.68 0.689277
Target:  5'- -uGGCgGCGGCGAGcAUCGCGAccgccgccccgcccGgcGCGc -3'
miRNA:   3'- cuCCG-CGCCGCUC-UAGCGCU--------------CaaCGC- -5'
8028 3' -58.5 NC_001973.1 + 45836 0.69 0.662446
Target:  5'- -cGGCGCGGCGu--UCGUGGGccuggGCGu -3'
miRNA:   3'- cuCCGCGCCGCucuAGCGCUCaa---CGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.