miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8028 5' -52.7 NC_001973.1 + 51840 0.66 0.986238
Target:  5'- -gUGCGuCUGUGCGAGcUGgg-CGCCg -3'
miRNA:   3'- caGCGUuGACAUGCUCcACacaGCGG- -5'
8028 5' -52.7 NC_001973.1 + 104461 0.66 0.984496
Target:  5'- -cUGCAGCUGgccgucgACGAGGUGg--UGCa -3'
miRNA:   3'- caGCGUUGACa------UGCUCCACacaGCGg -5'
8028 5' -52.7 NC_001973.1 + 4148 0.66 0.982592
Target:  5'- aGUCgGCGAUUaaGUACucGGUGgguccGUCGCCg -3'
miRNA:   3'- -CAG-CGUUGA--CAUGcuCCACa----CAGCGG- -5'
8028 5' -52.7 NC_001973.1 + 24089 0.66 0.975819
Target:  5'- -gCGCAccGCg--ACGAGGUcgacggcgacGUGUCGCUg -3'
miRNA:   3'- caGCGU--UGacaUGCUCCA----------CACAGCGG- -5'
8028 5' -52.7 NC_001973.1 + 40564 0.67 0.964031
Target:  5'- uUgGUGGCUGUACGAGGggGUGggaaaauagGCCa -3'
miRNA:   3'- cAgCGUUGACAUGCUCCa-CACag-------CGG- -5'
8028 5' -52.7 NC_001973.1 + 34968 0.67 0.964031
Target:  5'- -aCGCGcucACgg-ACGAGGUGUGcgUGCCc -3'
miRNA:   3'- caGCGU---UGacaUGCUCCACACa-GCGG- -5'
8028 5' -52.7 NC_001973.1 + 21494 0.67 0.959822
Target:  5'- cGUCGCGGCccgccgacuCGAGGUugcccagGUCGCCg -3'
miRNA:   3'- -CAGCGUUGacau-----GCUCCAca-----CAGCGG- -5'
8028 5' -52.7 NC_001973.1 + 103935 0.68 0.948715
Target:  5'- cGUCGCGGC---GCGGGGcGUGcCGUCg -3'
miRNA:   3'- -CAGCGUUGacaUGCUCCaCACaGCGG- -5'
8028 5' -52.7 NC_001973.1 + 135844 0.7 0.90019
Target:  5'- aUCGCcaccuuCUGgaGCGAGGUGUG-CGUCg -3'
miRNA:   3'- cAGCGuu----GACa-UGCUCCACACaGCGG- -5'
8028 5' -52.7 NC_001973.1 + 100579 0.7 0.893584
Target:  5'- -aCGCGAUUGUggugcaggcccaGCGAGGUGUcGcUCGCg -3'
miRNA:   3'- caGCGUUGACA------------UGCUCCACA-C-AGCGg -5'
8028 5' -52.7 NC_001973.1 + 93562 0.7 0.886743
Target:  5'- -gCGCGgcacGCUGgcCGAGGUGagcgGUCGCg -3'
miRNA:   3'- caGCGU----UGACauGCUCCACa---CAGCGg -5'
8028 5' -52.7 NC_001973.1 + 42147 0.71 0.841027
Target:  5'- -gCGCGACUGUuacuCGAGuUGUGgcCGCCg -3'
miRNA:   3'- caGCGUUGACAu---GCUCcACACa-GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.