miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8029 3' -56.4 NC_001973.1 + 105883 0.66 0.901323
Target:  5'- gGUGGCGaCGACG-CCGAGCUg-GCg-- -3'
miRNA:   3'- -CGCCGC-GCUGCaGGUUCGGgaUGaaa -5'
8029 3' -56.4 NC_001973.1 + 87116 0.66 0.894849
Target:  5'- cGCGuGCGCGGCGUgCGcGCgccggugcgccgCCUGCUg- -3'
miRNA:   3'- -CGC-CGCGCUGCAgGUuCG------------GGAUGAaa -5'
8029 3' -56.4 NC_001973.1 + 3717 0.66 0.894849
Target:  5'- cGCGaccGCGCGgcACGUgCAGGCCgUACa-- -3'
miRNA:   3'- -CGC---CGCGC--UGCAgGUUCGGgAUGaaa -5'
8029 3' -56.4 NC_001973.1 + 36024 0.66 0.888145
Target:  5'- -gGGCGCGGCcaaCAgauacggcaaccGGCCCUGCUa- -3'
miRNA:   3'- cgCCGCGCUGcagGU------------UCGGGAUGAaa -5'
8029 3' -56.4 NC_001973.1 + 34007 0.66 0.888145
Target:  5'- uCGaGCGCGuCGUCCAcGGCCCg----- -3'
miRNA:   3'- cGC-CGCGCuGCAGGU-UCGGGaugaaa -5'
8029 3' -56.4 NC_001973.1 + 95688 0.66 0.888145
Target:  5'- gGCGGCcCGACG----AGCCCUACa-- -3'
miRNA:   3'- -CGCCGcGCUGCagguUCGGGAUGaaa -5'
8029 3' -56.4 NC_001973.1 + 44596 0.66 0.874066
Target:  5'- cGCGGCgGCGGCGagCGGGCUCgGCc-- -3'
miRNA:   3'- -CGCCG-CGCUGCagGUUCGGGaUGaaa -5'
8029 3' -56.4 NC_001973.1 + 8810 0.66 0.874066
Target:  5'- cGCGGCGCGAagacacgaCGAGCCCg----- -3'
miRNA:   3'- -CGCCGCGCUgcag----GUUCGGGaugaaa -5'
8029 3' -56.4 NC_001973.1 + 4049 0.66 0.874066
Target:  5'- cGgGGCGC-ACGUCCcuGCCgUACc-- -3'
miRNA:   3'- -CgCCGCGcUGCAGGuuCGGgAUGaaa -5'
8029 3' -56.4 NC_001973.1 + 29680 0.67 0.866699
Target:  5'- cGCGGCGgaCGGCGaguUCCucGCCCgACUg- -3'
miRNA:   3'- -CGCCGC--GCUGC---AGGuuCGGGaUGAaa -5'
8029 3' -56.4 NC_001973.1 + 71026 0.67 0.866699
Target:  5'- cGCGGCGCG-CGUCCugauCCCgACc-- -3'
miRNA:   3'- -CGCCGCGCuGCAGGuuc-GGGaUGaaa -5'
8029 3' -56.4 NC_001973.1 + 19540 0.67 0.859121
Target:  5'- gGCGguGCGCGGCGUUUAcguGCCCgACUg- -3'
miRNA:   3'- -CGC--CGCGCUGCAGGUu--CGGGaUGAaa -5'
8029 3' -56.4 NC_001973.1 + 62701 0.67 0.850548
Target:  5'- gGCGGCGaCGACGUCgCGAaaaacuuGCCCa----- -3'
miRNA:   3'- -CGCCGC-GCUGCAG-GUU-------CGGGaugaaa -5'
8029 3' -56.4 NC_001973.1 + 33132 0.67 0.835182
Target:  5'- -aGGCGCuGCGUCgc-GCCCUGCa-- -3'
miRNA:   3'- cgCCGCGcUGCAGguuCGGGAUGaaa -5'
8029 3' -56.4 NC_001973.1 + 1580 0.67 0.827668
Target:  5'- cUGGCGCGACGaauugaucgccuccaCCAGGUCCUcCUUg -3'
miRNA:   3'- cGCCGCGCUGCa--------------GGUUCGGGAuGAAa -5'
8029 3' -56.4 NC_001973.1 + 39429 0.67 0.826824
Target:  5'- -aGGCGCGucGCGUCCAGggcgacgccgauGCCCaGCUc- -3'
miRNA:   3'- cgCCGCGC--UGCAGGUU------------CGGGaUGAaa -5'
8029 3' -56.4 NC_001973.1 + 53859 0.67 0.826824
Target:  5'- gGCGGCgGCGGCGccgCCGAGCgCgGCg-- -3'
miRNA:   3'- -CGCCG-CGCUGCa--GGUUCGgGaUGaaa -5'
8029 3' -56.4 NC_001973.1 + 97994 0.68 0.809584
Target:  5'- cGCGGUcgGCGACGUCCAcGCgCUcCg-- -3'
miRNA:   3'- -CGCCG--CGCUGCAGGUuCGgGAuGaaa -5'
8029 3' -56.4 NC_001973.1 + 45967 0.68 0.809584
Target:  5'- gGCGGC-CGGCG-CgCucGCCCUGCUg- -3'
miRNA:   3'- -CGCCGcGCUGCaG-GuuCGGGAUGAaa -5'
8029 3' -56.4 NC_001973.1 + 61124 0.68 0.809584
Target:  5'- cGgGGCGCGGCGUCgcuccuCGAGCUCgUACc-- -3'
miRNA:   3'- -CgCCGCGCUGCAG------GUUCGGG-AUGaaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.