miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8029 3' -56.4 NC_001973.1 + 144763 0.68 0.782539
Target:  5'- gGCGGCGCG-CGaggaCAAGUgCUACUUc -3'
miRNA:   3'- -CGCCGCGCuGCag--GUUCGgGAUGAAa -5'
8029 3' -56.4 NC_001973.1 + 145034 0.68 0.800719
Target:  5'- uGCGGCGCGAgCGcgUCGAGCgCCgACUc- -3'
miRNA:   3'- -CGCCGCGCU-GCa-GGUUCG-GGaUGAaa -5'
8029 3' -56.4 NC_001973.1 + 61124 0.68 0.809584
Target:  5'- cGgGGCGCGGCGUCgcuccuCGAGCUCgUACc-- -3'
miRNA:   3'- -CgCCGCGCUGCAG------GUUCGGG-AUGaaa -5'
8029 3' -56.4 NC_001973.1 + 45967 0.68 0.809584
Target:  5'- gGCGGC-CGGCG-CgCucGCCCUGCUg- -3'
miRNA:   3'- -CGCCGcGCUGCaG-GuuCGGGAUGAaa -5'
8029 3' -56.4 NC_001973.1 + 97994 0.68 0.809584
Target:  5'- cGCGGUcgGCGACGUCCAcGCgCUcCg-- -3'
miRNA:   3'- -CGCCG--CGCUGCAGGUuCGgGAuGaaa -5'
8029 3' -56.4 NC_001973.1 + 69931 0.69 0.72505
Target:  5'- cGCGGCGCG-UGagCAGGCcCCUGCc-- -3'
miRNA:   3'- -CGCCGCGCuGCagGUUCG-GGAUGaaa -5'
8029 3' -56.4 NC_001973.1 + 83044 0.69 0.744631
Target:  5'- gGCGGCGCGccCGU-CGAGCCCgcgGCc-- -3'
miRNA:   3'- -CGCCGCGCu-GCAgGUUCGGGa--UGaaa -5'
8029 3' -56.4 NC_001973.1 + 5144 0.69 0.754279
Target:  5'- cCGGC-CGugGUgCAGGCCCaGCUg- -3'
miRNA:   3'- cGCCGcGCugCAgGUUCGGGaUGAaa -5'
8029 3' -56.4 NC_001973.1 + 9474 0.69 0.754279
Target:  5'- gGUGGCGUuGCG-CCAAGCCCUu---- -3'
miRNA:   3'- -CGCCGCGcUGCaGGUUCGGGAugaaa -5'
8029 3' -56.4 NC_001973.1 + 15349 0.69 0.754279
Target:  5'- aGCGGCGCGGCGUUgCGGuGUCgUACa-- -3'
miRNA:   3'- -CGCCGCGCUGCAG-GUU-CGGgAUGaaa -5'
8029 3' -56.4 NC_001973.1 + 127117 0.69 0.763819
Target:  5'- aGCuGGCgGCGACGUCCuuGGCCacaaACUUg -3'
miRNA:   3'- -CG-CCG-CGCUGCAGGu-UCGGga--UGAAa -5'
8029 3' -56.4 NC_001973.1 + 5961 0.7 0.695101
Target:  5'- gGCGGaUGCGACGUCCu-GCaCUUGCa-- -3'
miRNA:   3'- -CGCC-GCGCUGCAGGuuCG-GGAUGaaa -5'
8029 3' -56.4 NC_001973.1 + 28659 0.7 0.715135
Target:  5'- cGCGaGCGCGGCGUCgAGcGCgCUGCc-- -3'
miRNA:   3'- -CGC-CGCGCUGCAGgUU-CGgGAUGaaa -5'
8029 3' -56.4 NC_001973.1 + 77314 0.71 0.654472
Target:  5'- gGCGGCGCGGC-UCCGAaaaacGCCUUGgUUUu -3'
miRNA:   3'- -CGCCGCGCUGcAGGUU-----CGGGAUgAAA- -5'
8029 3' -56.4 NC_001973.1 + 40165 0.71 0.654472
Target:  5'- gGCGGuCGCGugGcCCGAGCUgauCUGCa-- -3'
miRNA:   3'- -CGCC-GCGCugCaGGUUCGG---GAUGaaa -5'
8029 3' -56.4 NC_001973.1 + 39790 0.71 0.643226
Target:  5'- cGCGGCGCGAcuCGUCCAagaaucgggccacGGCCUccgACa-- -3'
miRNA:   3'- -CGCCGCGCU--GCAGGU-------------UCGGGa--UGaaa -5'
8029 3' -56.4 NC_001973.1 + 128451 0.72 0.562768
Target:  5'- cGCGuGCaCGGCGUUCAuGCCCUGCg-- -3'
miRNA:   3'- -CGC-CGcGCUGCAGGUuCGGGAUGaaa -5'
8029 3' -56.4 NC_001973.1 + 4857 0.72 0.562768
Target:  5'- gGCgGGCGCGACGUUUccGCCgUGCUc- -3'
miRNA:   3'- -CG-CCGCGCUGCAGGuuCGGgAUGAaa -5'
8029 3' -56.4 NC_001973.1 + 121013 0.72 0.55273
Target:  5'- -gGGCGCGuugGCGgCCAAGUCCUGCa-- -3'
miRNA:   3'- cgCCGCGC---UGCaGGUUCGGGAUGaaa -5'
8029 3' -56.4 NC_001973.1 + 96772 0.73 0.532822
Target:  5'- gGCGGCGUGGCGgCCAacgcGGCCCagUACa-- -3'
miRNA:   3'- -CGCCGCGCUGCaGGU----UCGGG--AUGaaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.