miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8029 3' -56.4 NC_001973.1 + 118493 0.78 0.268338
Target:  5'- cGUGGCgGCGACucgCCAGGCCCUGCg-- -3'
miRNA:   3'- -CGCCG-CGCUGca-GGUUCGGGAUGaaa -5'
8029 3' -56.4 NC_001973.1 + 106417 0.77 0.338111
Target:  5'- uGCGGCGCGACG-CCGAGCgCgGCg-- -3'
miRNA:   3'- -CGCCGCGCUGCaGGUUCGgGaUGaaa -5'
8029 3' -56.4 NC_001973.1 + 101557 0.76 0.361465
Target:  5'- gGUGGCGCGugGUCCAGGCgC-GCa-- -3'
miRNA:   3'- -CGCCGCGCugCAGGUUCGgGaUGaaa -5'
8029 3' -56.4 NC_001973.1 + 6350 0.76 0.369495
Target:  5'- uGCGGCGuCGAgGgggCCGAGCCUUGCg-- -3'
miRNA:   3'- -CGCCGC-GCUgCa--GGUUCGGGAUGaaa -5'
8029 3' -56.4 NC_001973.1 + 115101 0.75 0.411437
Target:  5'- -aGGCGCGAUGUCUGAGCCggGCg-- -3'
miRNA:   3'- cgCCGCGCUGCAGGUUCGGgaUGaaa -5'
8029 3' -56.4 NC_001973.1 + 109416 0.75 0.437977
Target:  5'- cCGGCGCGuCGUCCAAGUCgaGCa-- -3'
miRNA:   3'- cGCCGCGCuGCAGGUUCGGgaUGaaa -5'
8029 3' -56.4 NC_001973.1 + 120389 0.73 0.513177
Target:  5'- gGCGGgGCGAUGUCCGccGCCCgACg-- -3'
miRNA:   3'- -CGCCgCGCUGCAGGUu-CGGGaUGaaa -5'
8029 3' -56.4 NC_001973.1 + 96772 0.73 0.532822
Target:  5'- gGCGGCGUGGCGgCCAacgcGGCCCagUACa-- -3'
miRNA:   3'- -CGCCGCGCUGCaGGU----UCGGG--AUGaaa -5'
8029 3' -56.4 NC_001973.1 + 98805 0.73 0.532822
Target:  5'- cCGGCGCGAUGUCCAcGCUCaugACg-- -3'
miRNA:   3'- cGCCGCGCUGCAGGUuCGGGa--UGaaa -5'
8029 3' -56.4 NC_001973.1 + 45835 0.73 0.522964
Target:  5'- cCGGCGCGGCGUUCGugGGCCUggGCg-- -3'
miRNA:   3'- cGCCGCGCUGCAGGU--UCGGGa-UGaaa -5'
8029 3' -56.4 NC_001973.1 + 4857 0.72 0.562768
Target:  5'- gGCgGGCGCGACGUUUccGCCgUGCUc- -3'
miRNA:   3'- -CG-CCGCGCUGCAGGuuCGGgAUGAaa -5'
8029 3' -56.4 NC_001973.1 + 128451 0.72 0.562768
Target:  5'- cGCGuGCaCGGCGUUCAuGCCCUGCg-- -3'
miRNA:   3'- -CGC-CGcGCUGCAGGUuCGGGAUGaaa -5'
8029 3' -56.4 NC_001973.1 + 121013 0.72 0.55273
Target:  5'- -gGGCGCGuugGCGgCCAAGUCCUGCa-- -3'
miRNA:   3'- cgCCGCGC---UGCaGGUUCGGGAUGaaa -5'
8029 3' -56.4 NC_001973.1 + 39790 0.71 0.643226
Target:  5'- cGCGGCGCGAcuCGUCCAagaaucgggccacGGCCUccgACa-- -3'
miRNA:   3'- -CGCCGCGCU--GCAGGU-------------UCGGGa--UGaaa -5'
8029 3' -56.4 NC_001973.1 + 40165 0.71 0.654472
Target:  5'- gGCGGuCGCGugGcCCGAGCUgauCUGCa-- -3'
miRNA:   3'- -CGCC-GCGCugCaGGUUCGG---GAUGaaa -5'
8029 3' -56.4 NC_001973.1 + 77314 0.71 0.654472
Target:  5'- gGCGGCGCGGC-UCCGAaaaacGCCUUGgUUUu -3'
miRNA:   3'- -CGCCGCGCUGcAGGUU-----CGGGAUgAAA- -5'
8029 3' -56.4 NC_001973.1 + 5961 0.7 0.695101
Target:  5'- gGCGGaUGCGACGUCCu-GCaCUUGCa-- -3'
miRNA:   3'- -CGCC-GCGCUGCAGGuuCG-GGAUGaaa -5'
8029 3' -56.4 NC_001973.1 + 28659 0.7 0.715135
Target:  5'- cGCGaGCGCGGCGUCgAGcGCgCUGCc-- -3'
miRNA:   3'- -CGC-CGCGCUGCAGgUU-CGgGAUGaaa -5'
8029 3' -56.4 NC_001973.1 + 5144 0.69 0.754279
Target:  5'- cCGGC-CGugGUgCAGGCCCaGCUg- -3'
miRNA:   3'- cGCCGcGCugCAgGUUCGGGaUGAaa -5'
8029 3' -56.4 NC_001973.1 + 15349 0.69 0.754279
Target:  5'- aGCGGCGCGGCGUUgCGGuGUCgUACa-- -3'
miRNA:   3'- -CGCCGCGCUGCAG-GUU-CGGgAUGaaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.