Results 41 - 49 of 49 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
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P value |
| Predicted miRNA align pattern | |||||||
| 8029 | 3' | -56.4 | NC_001973.1 | + | 87116 | 0.66 | 0.894849 |
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Target: 5'- cGCGuGCGCGGCGUgCGcGCgccggugcgccgCCUGCUg- -3' miRNA: 3'- -CGC-CGCGCUGCAgGUuCG------------GGAUGAaa -5' |
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| 8029 | 3' | -56.4 | NC_001973.1 | + | 3717 | 0.66 | 0.894849 |
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Target: 5'- cGCGaccGCGCGgcACGUgCAGGCCgUACa-- -3' miRNA: 3'- -CGC---CGCGC--UGCAgGUUCGGgAUGaaa -5' |
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| 8029 | 3' | -56.4 | NC_001973.1 | + | 95688 | 0.66 | 0.888145 |
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Target: 5'- gGCGGCcCGACG----AGCCCUACa-- -3' miRNA: 3'- -CGCCGcGCUGCagguUCGGGAUGaaa -5' |
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| 8029 | 3' | -56.4 | NC_001973.1 | + | 34007 | 0.66 | 0.888145 |
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Target: 5'- uCGaGCGCGuCGUCCAcGGCCCg----- -3' miRNA: 3'- cGC-CGCGCuGCAGGU-UCGGGaugaaa -5' |
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| 8029 | 3' | -56.4 | NC_001973.1 | + | 36024 | 0.66 | 0.888145 |
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Target: 5'- -gGGCGCGGCcaaCAgauacggcaaccGGCCCUGCUa- -3' miRNA: 3'- cgCCGCGCUGcagGU------------UCGGGAUGAaa -5' |
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| 8029 | 3' | -56.4 | NC_001973.1 | + | 44596 | 0.66 | 0.874066 |
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Target: 5'- cGCGGCgGCGGCGagCGGGCUCgGCc-- -3' miRNA: 3'- -CGCCG-CGCUGCagGUUCGGGaUGaaa -5' |
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| 8029 | 3' | -56.4 | NC_001973.1 | + | 8810 | 0.66 | 0.874066 |
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Target: 5'- cGCGGCGCGAagacacgaCGAGCCCg----- -3' miRNA: 3'- -CGCCGCGCUgcag----GUUCGGGaugaaa -5' |
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| 8029 | 3' | -56.4 | NC_001973.1 | + | 4049 | 0.66 | 0.874066 |
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Target: 5'- cGgGGCGC-ACGUCCcuGCCgUACc-- -3' miRNA: 3'- -CgCCGCGcUGCAGGuuCGGgAUGaaa -5' |
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| 8029 | 3' | -56.4 | NC_001973.1 | + | 105883 | 0.66 | 0.901323 |
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Target: 5'- gGUGGCGaCGACG-CCGAGCUg-GCg-- -3' miRNA: 3'- -CGCCGC-GCUGCaGGUUCGGgaUGaaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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