miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8029 3' -56.4 NC_001973.1 + 5144 0.69 0.754279
Target:  5'- cCGGC-CGugGUgCAGGCCCaGCUg- -3'
miRNA:   3'- cGCCGcGCugCAgGUUCGGGaUGAaa -5'
8029 3' -56.4 NC_001973.1 + 9474 0.69 0.754279
Target:  5'- gGUGGCGUuGCG-CCAAGCCCUu---- -3'
miRNA:   3'- -CGCCGCGcUGCaGGUUCGGGAugaaa -5'
8029 3' -56.4 NC_001973.1 + 15349 0.69 0.754279
Target:  5'- aGCGGCGCGGCGUUgCGGuGUCgUACa-- -3'
miRNA:   3'- -CGCCGCGCUGCAG-GUU-CGGgAUGaaa -5'
8029 3' -56.4 NC_001973.1 + 127117 0.69 0.763819
Target:  5'- aGCuGGCgGCGACGUCCuuGGCCacaaACUUg -3'
miRNA:   3'- -CG-CCG-CGCUGCAGGu-UCGGga--UGAAa -5'
8029 3' -56.4 NC_001973.1 + 88498 0.68 0.781615
Target:  5'- cGCGGCGCGGC-UCCAuauuguuGGCCaagUACa-- -3'
miRNA:   3'- -CGCCGCGCUGcAGGU-------UCGGg--AUGaaa -5'
8029 3' -56.4 NC_001973.1 + 98349 0.68 0.782539
Target:  5'- gGCGGCGCG-CGUUC-GGCCgCUuucggGCUUUg -3'
miRNA:   3'- -CGCCGCGCuGCAGGuUCGG-GA-----UGAAA- -5'
8029 3' -56.4 NC_001973.1 + 107338 0.68 0.782539
Target:  5'- gGCGgaGCGCGcACGUCCAcGCCCcccgGCg-- -3'
miRNA:   3'- -CGC--CGCGC-UGCAGGUuCGGGa---UGaaa -5'
8029 3' -56.4 NC_001973.1 + 144763 0.68 0.782539
Target:  5'- gGCGGCGCG-CGaggaCAAGUgCUACUUc -3'
miRNA:   3'- -CGCCGCGCuGCag--GUUCGgGAUGAAa -5'
8029 3' -56.4 NC_001973.1 + 145034 0.68 0.800719
Target:  5'- uGCGGCGCGAgCGcgUCGAGCgCCgACUc- -3'
miRNA:   3'- -CGCCGCGCU-GCa-GGUUCG-GGaUGAaa -5'
8029 3' -56.4 NC_001973.1 + 97994 0.68 0.809584
Target:  5'- cGCGGUcgGCGACGUCCAcGCgCUcCg-- -3'
miRNA:   3'- -CGCCG--CGCUGCAGGUuCGgGAuGaaa -5'
8029 3' -56.4 NC_001973.1 + 45967 0.68 0.809584
Target:  5'- gGCGGC-CGGCG-CgCucGCCCUGCUg- -3'
miRNA:   3'- -CGCCGcGCUGCaG-GuuCGGGAUGAaa -5'
8029 3' -56.4 NC_001973.1 + 61124 0.68 0.809584
Target:  5'- cGgGGCGCGGCGUCgcuccuCGAGCUCgUACc-- -3'
miRNA:   3'- -CgCCGCGCUGCAG------GUUCGGG-AUGaaa -5'
8029 3' -56.4 NC_001973.1 + 39429 0.67 0.826824
Target:  5'- -aGGCGCGucGCGUCCAGggcgacgccgauGCCCaGCUc- -3'
miRNA:   3'- cgCCGCGC--UGCAGGUU------------CGGGaUGAaa -5'
8029 3' -56.4 NC_001973.1 + 53859 0.67 0.826824
Target:  5'- gGCGGCgGCGGCGccgCCGAGCgCgGCg-- -3'
miRNA:   3'- -CGCCG-CGCUGCa--GGUUCGgGaUGaaa -5'
8029 3' -56.4 NC_001973.1 + 1580 0.67 0.827668
Target:  5'- cUGGCGCGACGaauugaucgccuccaCCAGGUCCUcCUUg -3'
miRNA:   3'- cGCCGCGCUGCa--------------GGUUCGGGAuGAAa -5'
8029 3' -56.4 NC_001973.1 + 33132 0.67 0.835182
Target:  5'- -aGGCGCuGCGUCgc-GCCCUGCa-- -3'
miRNA:   3'- cgCCGCGcUGCAGguuCGGGAUGaaa -5'
8029 3' -56.4 NC_001973.1 + 62701 0.67 0.850548
Target:  5'- gGCGGCGaCGACGUCgCGAaaaacuuGCCCa----- -3'
miRNA:   3'- -CGCCGC-GCUGCAG-GUU-------CGGGaugaaa -5'
8029 3' -56.4 NC_001973.1 + 19540 0.67 0.859121
Target:  5'- gGCGguGCGCGGCGUUUAcguGCCCgACUg- -3'
miRNA:   3'- -CGC--CGCGCUGCAGGUu--CGGGaUGAaa -5'
8029 3' -56.4 NC_001973.1 + 29680 0.67 0.866699
Target:  5'- cGCGGCGgaCGGCGaguUCCucGCCCgACUg- -3'
miRNA:   3'- -CGCCGC--GCUGC---AGGuuCGGGaUGAaa -5'
8029 3' -56.4 NC_001973.1 + 71026 0.67 0.866699
Target:  5'- cGCGGCGCG-CGUCCugauCCCgACc-- -3'
miRNA:   3'- -CGCCGCGCuGCAGGuuc-GGGaUGaaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.