Results 21 - 40 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8029 | 3' | -56.4 | NC_001973.1 | + | 145034 | 0.68 | 0.800719 |
Target: 5'- uGCGGCGCGAgCGcgUCGAGCgCCgACUc- -3' miRNA: 3'- -CGCCGCGCU-GCa-GGUUCG-GGaUGAaa -5' |
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8029 | 3' | -56.4 | NC_001973.1 | + | 144763 | 0.68 | 0.782539 |
Target: 5'- gGCGGCGCG-CGaggaCAAGUgCUACUUc -3' miRNA: 3'- -CGCCGCGCuGCag--GUUCGgGAUGAAa -5' |
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8029 | 3' | -56.4 | NC_001973.1 | + | 107338 | 0.68 | 0.782539 |
Target: 5'- gGCGgaGCGCGcACGUCCAcGCCCcccgGCg-- -3' miRNA: 3'- -CGC--CGCGC-UGCAGGUuCGGGa---UGaaa -5' |
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8029 | 3' | -56.4 | NC_001973.1 | + | 98349 | 0.68 | 0.782539 |
Target: 5'- gGCGGCGCG-CGUUC-GGCCgCUuucggGCUUUg -3' miRNA: 3'- -CGCCGCGCuGCAGGuUCGG-GA-----UGAAA- -5' |
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8029 | 3' | -56.4 | NC_001973.1 | + | 88498 | 0.68 | 0.781615 |
Target: 5'- cGCGGCGCGGC-UCCAuauuguuGGCCaagUACa-- -3' miRNA: 3'- -CGCCGCGCUGcAGGU-------UCGGg--AUGaaa -5' |
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8029 | 3' | -56.4 | NC_001973.1 | + | 127117 | 0.69 | 0.763819 |
Target: 5'- aGCuGGCgGCGACGUCCuuGGCCacaaACUUg -3' miRNA: 3'- -CG-CCG-CGCUGCAGGu-UCGGga--UGAAa -5' |
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8029 | 3' | -56.4 | NC_001973.1 | + | 5144 | 0.69 | 0.754279 |
Target: 5'- cCGGC-CGugGUgCAGGCCCaGCUg- -3' miRNA: 3'- cGCCGcGCugCAgGUUCGGGaUGAaa -5' |
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8029 | 3' | -56.4 | NC_001973.1 | + | 9474 | 0.69 | 0.754279 |
Target: 5'- gGUGGCGUuGCG-CCAAGCCCUu---- -3' miRNA: 3'- -CGCCGCGcUGCaGGUUCGGGAugaaa -5' |
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8029 | 3' | -56.4 | NC_001973.1 | + | 15349 | 0.69 | 0.754279 |
Target: 5'- aGCGGCGCGGCGUUgCGGuGUCgUACa-- -3' miRNA: 3'- -CGCCGCGCUGCAG-GUU-CGGgAUGaaa -5' |
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8029 | 3' | -56.4 | NC_001973.1 | + | 83044 | 0.69 | 0.744631 |
Target: 5'- gGCGGCGCGccCGU-CGAGCCCgcgGCc-- -3' miRNA: 3'- -CGCCGCGCu-GCAgGUUCGGGa--UGaaa -5' |
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8029 | 3' | -56.4 | NC_001973.1 | + | 69931 | 0.69 | 0.72505 |
Target: 5'- cGCGGCGCG-UGagCAGGCcCCUGCc-- -3' miRNA: 3'- -CGCCGCGCuGCagGUUCG-GGAUGaaa -5' |
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8029 | 3' | -56.4 | NC_001973.1 | + | 28659 | 0.7 | 0.715135 |
Target: 5'- cGCGaGCGCGGCGUCgAGcGCgCUGCc-- -3' miRNA: 3'- -CGC-CGCGCUGCAGgUU-CGgGAUGaaa -5' |
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8029 | 3' | -56.4 | NC_001973.1 | + | 5961 | 0.7 | 0.695101 |
Target: 5'- gGCGGaUGCGACGUCCu-GCaCUUGCa-- -3' miRNA: 3'- -CGCC-GCGCUGCAGGuuCG-GGAUGaaa -5' |
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8029 | 3' | -56.4 | NC_001973.1 | + | 77314 | 0.71 | 0.654472 |
Target: 5'- gGCGGCGCGGC-UCCGAaaaacGCCUUGgUUUu -3' miRNA: 3'- -CGCCGCGCUGcAGGUU-----CGGGAUgAAA- -5' |
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8029 | 3' | -56.4 | NC_001973.1 | + | 40165 | 0.71 | 0.654472 |
Target: 5'- gGCGGuCGCGugGcCCGAGCUgauCUGCa-- -3' miRNA: 3'- -CGCC-GCGCugCaGGUUCGG---GAUGaaa -5' |
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8029 | 3' | -56.4 | NC_001973.1 | + | 39790 | 0.71 | 0.643226 |
Target: 5'- cGCGGCGCGAcuCGUCCAagaaucgggccacGGCCUccgACa-- -3' miRNA: 3'- -CGCCGCGCU--GCAGGU-------------UCGGGa--UGaaa -5' |
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8029 | 3' | -56.4 | NC_001973.1 | + | 128451 | 0.72 | 0.562768 |
Target: 5'- cGCGuGCaCGGCGUUCAuGCCCUGCg-- -3' miRNA: 3'- -CGC-CGcGCUGCAGGUuCGGGAUGaaa -5' |
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8029 | 3' | -56.4 | NC_001973.1 | + | 4857 | 0.72 | 0.562768 |
Target: 5'- gGCgGGCGCGACGUUUccGCCgUGCUc- -3' miRNA: 3'- -CG-CCGCGCUGCAGGuuCGGgAUGAaa -5' |
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8029 | 3' | -56.4 | NC_001973.1 | + | 121013 | 0.72 | 0.55273 |
Target: 5'- -gGGCGCGuugGCGgCCAAGUCCUGCa-- -3' miRNA: 3'- cgCCGCGC---UGCaGGUUCGGGAUGaaa -5' |
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8029 | 3' | -56.4 | NC_001973.1 | + | 96772 | 0.73 | 0.532822 |
Target: 5'- gGCGGCGUGGCGgCCAacgcGGCCCagUACa-- -3' miRNA: 3'- -CGCCGCGCUGCaGGU----UCGGG--AUGaaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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