Results 41 - 49 of 49 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 8029 | 3' | -56.4 | NC_001973.1 | + | 96772 | 0.73 | 0.532822 |
|
Target: 5'- gGCGGCGUGGCGgCCAacgcGGCCCagUACa-- -3' miRNA: 3'- -CGCCGCGCUGCaGGU----UCGGG--AUGaaa -5' |
|||||||
| 8029 | 3' | -56.4 | NC_001973.1 | + | 45835 | 0.73 | 0.522964 |
|
Target: 5'- cCGGCGCGGCGUUCGugGGCCUggGCg-- -3' miRNA: 3'- cGCCGCGCUGCAGGU--UCGGGa-UGaaa -5' |
|||||||
| 8029 | 3' | -56.4 | NC_001973.1 | + | 120389 | 0.73 | 0.513177 |
|
Target: 5'- gGCGGgGCGAUGUCCGccGCCCgACg-- -3' miRNA: 3'- -CGCCgCGCUGCAGGUu-CGGGaUGaaa -5' |
|||||||
| 8029 | 3' | -56.4 | NC_001973.1 | + | 109416 | 0.75 | 0.437977 |
|
Target: 5'- cCGGCGCGuCGUCCAAGUCgaGCa-- -3' miRNA: 3'- cGCCGCGCuGCAGGUUCGGgaUGaaa -5' |
|||||||
| 8029 | 3' | -56.4 | NC_001973.1 | + | 115101 | 0.75 | 0.411437 |
|
Target: 5'- -aGGCGCGAUGUCUGAGCCggGCg-- -3' miRNA: 3'- cgCCGCGCUGCAGGUUCGGgaUGaaa -5' |
|||||||
| 8029 | 3' | -56.4 | NC_001973.1 | + | 6350 | 0.76 | 0.369495 |
|
Target: 5'- uGCGGCGuCGAgGgggCCGAGCCUUGCg-- -3' miRNA: 3'- -CGCCGC-GCUgCa--GGUUCGGGAUGaaa -5' |
|||||||
| 8029 | 3' | -56.4 | NC_001973.1 | + | 101557 | 0.76 | 0.361465 |
|
Target: 5'- gGUGGCGCGugGUCCAGGCgC-GCa-- -3' miRNA: 3'- -CGCCGCGCugCAGGUUCGgGaUGaaa -5' |
|||||||
| 8029 | 3' | -56.4 | NC_001973.1 | + | 106417 | 0.77 | 0.338111 |
|
Target: 5'- uGCGGCGCGACG-CCGAGCgCgGCg-- -3' miRNA: 3'- -CGCCGCGCUGCaGGUUCGgGaUGaaa -5' |
|||||||
| 8029 | 3' | -56.4 | NC_001973.1 | + | 118493 | 0.78 | 0.268338 |
|
Target: 5'- cGUGGCgGCGACucgCCAGGCCCUGCg-- -3' miRNA: 3'- -CGCCG-CGCUGca-GGUUCGGGAUGaaa -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home