miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8029 5' -53.5 NC_001973.1 + 123193 0.66 0.982836
Target:  5'- -cAGGAaCGCGcagacgUCGucGUCGUCGgUCCa -3'
miRNA:   3'- ccUCCUaGCGCa-----AGU--CAGCAGCgAGG- -5'
8029 5' -53.5 NC_001973.1 + 31005 0.66 0.982836
Target:  5'- -cAGGccCGCGUUCAcggcGUCGgCGCUCa -3'
miRNA:   3'- ccUCCuaGCGCAAGU----CAGCaGCGAGg -5'
8029 5' -53.5 NC_001973.1 + 5821 0.66 0.982836
Target:  5'- aGGAGGAguUCGcCGaUCuGggcgCGUCGUUCg -3'
miRNA:   3'- -CCUCCU--AGC-GCaAGuCa---GCAGCGAGg -5'
8029 5' -53.5 NC_001973.1 + 131412 0.66 0.980823
Target:  5'- ---uGGUCGCGgUCcgGGUCGUCGCUa- -3'
miRNA:   3'- ccucCUAGCGCaAG--UCAGCAGCGAgg -5'
8029 5' -53.5 NC_001973.1 + 39262 0.66 0.980823
Target:  5'- uGAGGGcgucgccgUCGCGgcgCAGcgCGU-GCUCCg -3'
miRNA:   3'- cCUCCU--------AGCGCaa-GUCa-GCAgCGAGG- -5'
8029 5' -53.5 NC_001973.1 + 87267 0.66 0.973725
Target:  5'- cGGAcgcGGAaauagccguucUCGCcc-CAGUCGUCGCcCCa -3'
miRNA:   3'- -CCU---CCU-----------AGCGcaaGUCAGCAGCGaGG- -5'
8029 5' -53.5 NC_001973.1 + 5070 0.67 0.970982
Target:  5'- cGGGGGA-CGCGcgCGG-CGUUGCg-- -3'
miRNA:   3'- -CCUCCUaGCGCaaGUCaGCAGCGagg -5'
8029 5' -53.5 NC_001973.1 + 36684 0.67 0.961531
Target:  5'- cGAGGAcaagccUCGCGcggCcGUCGUCcGCUUCg -3'
miRNA:   3'- cCUCCU------AGCGCaa-GuCAGCAG-CGAGG- -5'
8029 5' -53.5 NC_001973.1 + 18571 0.68 0.954158
Target:  5'- --uGGAaCGCGUgaacCAGUUGUucgaCGCUCCu -3'
miRNA:   3'- ccuCCUaGCGCAa---GUCAGCA----GCGAGG- -5'
8029 5' -53.5 NC_001973.1 + 61121 0.68 0.945884
Target:  5'- cGGcGGggCGCGg-----CGUCGCUCCu -3'
miRNA:   3'- -CCuCCuaGCGCaagucaGCAGCGAGG- -5'
8029 5' -53.5 NC_001973.1 + 14086 0.69 0.926547
Target:  5'- -aAGGAUCGCaaaucucgccGUUCAGauaGcCGCUCCa -3'
miRNA:   3'- ccUCCUAGCG----------CAAGUCag-CaGCGAGG- -5'
8029 5' -53.5 NC_001973.1 + 107960 0.73 0.733432
Target:  5'- uGAGGGUCGCGUgcuccgacacgauuaUCAGgcCGUCGUcgCCg -3'
miRNA:   3'- cCUCCUAGCGCA---------------AGUCa-GCAGCGa-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.