miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8030 3' -56.6 NC_001973.1 + 37044 0.66 0.922725
Target:  5'- aCGCCGCGcgagCuGcGCACCUACG-CCg -3'
miRNA:   3'- -GUGGCGCaua-GcCaCGUGGGUGCuGG- -5'
8030 3' -56.6 NC_001973.1 + 18246 0.66 0.922184
Target:  5'- gCGCUGCucgaGUCGGUcccgucgGCGCaCACGGCCg -3'
miRNA:   3'- -GUGGCGca--UAGCCA-------CGUGgGUGCUGG- -5'
8030 3' -56.6 NC_001973.1 + 32050 0.66 0.922184
Target:  5'- gCAUCGCGUugccggCGGUGCgcugccaGCCCAgCGAg- -3'
miRNA:   3'- -GUGGCGCAua----GCCACG-------UGGGU-GCUgg -5'
8030 3' -56.6 NC_001973.1 + 140273 0.66 0.917213
Target:  5'- gGgCGCGUAccCGGUGUGuCCCAUuuguaaGACCg -3'
miRNA:   3'- gUgGCGCAUa-GCCACGU-GGGUG------CUGG- -5'
8030 3' -56.6 NC_001973.1 + 62476 0.66 0.911473
Target:  5'- gGCUGCGUGcUGGUGCugUggucgUACGGCa -3'
miRNA:   3'- gUGGCGCAUaGCCACGugG-----GUGCUGg -5'
8030 3' -56.6 NC_001973.1 + 68409 0.66 0.911473
Target:  5'- gAUCGUGcgcUCGGcGCGCUCGuCGGCCa -3'
miRNA:   3'- gUGGCGCau-AGCCaCGUGGGU-GCUGG- -5'
8030 3' -56.6 NC_001973.1 + 141300 0.66 0.911473
Target:  5'- gAUCGUGguggAUCGGUacGCGCCCGacaaGuACCg -3'
miRNA:   3'- gUGGCGCa---UAGCCA--CGUGGGUg---C-UGG- -5'
8030 3' -56.6 NC_001973.1 + 30589 0.66 0.910297
Target:  5'- aAUCGUGUcguuAUCGGccGCACCCuugugucguuauCGGCCg -3'
miRNA:   3'- gUGGCGCA----UAGCCa-CGUGGGu-----------GCUGG- -5'
8030 3' -56.6 NC_001973.1 + 8003 0.66 0.905505
Target:  5'- cCGCCGuUGUAuaagaaUCGGgccGCGgCCGCGACa -3'
miRNA:   3'- -GUGGC-GCAU------AGCCa--CGUgGGUGCUGg -5'
8030 3' -56.6 NC_001973.1 + 56337 0.66 0.899311
Target:  5'- gCGCCGCGcUcgCGGccGCGCUCG-GGCCc -3'
miRNA:   3'- -GUGGCGC-AuaGCCa-CGUGGGUgCUGG- -5'
8030 3' -56.6 NC_001973.1 + 71758 0.66 0.899311
Target:  5'- gGCCGCGc--CGG-GC-CCCGCcGCCg -3'
miRNA:   3'- gUGGCGCauaGCCaCGuGGGUGcUGG- -5'
8030 3' -56.6 NC_001973.1 + 86165 0.66 0.899311
Target:  5'- aACaCGCGUG--GGUGgACCUgcugGCGGCCg -3'
miRNA:   3'- gUG-GCGCAUagCCACgUGGG----UGCUGG- -5'
8030 3' -56.6 NC_001973.1 + 139896 0.66 0.899311
Target:  5'- gAgCGCGUgguGUCGGUGCugC-GCG-CCa -3'
miRNA:   3'- gUgGCGCA---UAGCCACGugGgUGCuGG- -5'
8030 3' -56.6 NC_001973.1 + 14930 0.66 0.892895
Target:  5'- gCACCGCGcAUCGcGuUGCuuucGCCCgcGCGugCg -3'
miRNA:   3'- -GUGGCGCaUAGC-C-ACG----UGGG--UGCugG- -5'
8030 3' -56.6 NC_001973.1 + 133786 0.66 0.892895
Target:  5'- aACgGUGUgcucGUCGGUGCGCaggUACGGCg -3'
miRNA:   3'- gUGgCGCA----UAGCCACGUGg--GUGCUGg -5'
8030 3' -56.6 NC_001973.1 + 141361 0.66 0.892895
Target:  5'- aACgCGCGauuccccUCGGUGCACgCCaACGAgCCg -3'
miRNA:   3'- gUG-GCGCau-----AGCCACGUG-GG-UGCU-GG- -5'
8030 3' -56.6 NC_001973.1 + 8230 0.66 0.892895
Target:  5'- aGCCGCGaga-GGUGCugAUCCgaucgGCGGCCa -3'
miRNA:   3'- gUGGCGCauagCCACG--UGGG-----UGCUGG- -5'
8030 3' -56.6 NC_001973.1 + 138711 0.66 0.892895
Target:  5'- gGCCuGCGUG-CGGUG-AUCCGaGACCa -3'
miRNA:   3'- gUGG-CGCAUaGCCACgUGGGUgCUGG- -5'
8030 3' -56.6 NC_001973.1 + 144451 0.66 0.892895
Target:  5'- aCGCgCGCGUGUCGGgcgGCGUgCGgGACa -3'
miRNA:   3'- -GUG-GCGCAUAGCCa--CGUGgGUgCUGg -5'
8030 3' -56.6 NC_001973.1 + 4812 0.66 0.892895
Target:  5'- gAgCGCGUA-CGGcgacacgcUGuCGCgCCACGACCg -3'
miRNA:   3'- gUgGCGCAUaGCC--------AC-GUG-GGUGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.