miRNA display CGI


Results 1 - 20 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8031 3' -59 NC_001973.1 + 72845 0.66 0.839175
Target:  5'- gCGCAGuccgaUGGAccGuCGCCGccUCG-CGCGCCu -3'
miRNA:   3'- -GCGUUg----ACCU--C-GCGGC--AGCuGCGCGG- -5'
8031 3' -59 NC_001973.1 + 58804 0.66 0.839175
Target:  5'- gCGCgAGCUGGAGCuGCUGcugUGcACGCuCCg -3'
miRNA:   3'- -GCG-UUGACCUCG-CGGCa--GC-UGCGcGG- -5'
8031 3' -59 NC_001973.1 + 1203 0.66 0.839175
Target:  5'- uGCAucuuCUucGGAGuCGCCGcCGcCGcCGCCg -3'
miRNA:   3'- gCGUu---GA--CCUC-GCGGCaGCuGC-GCGG- -5'
8031 3' -59 NC_001973.1 + 6210 0.66 0.839175
Target:  5'- gGCGGCgc-GGUGCCGgcgCGGCGC-CCu -3'
miRNA:   3'- gCGUUGaccUCGCGGCa--GCUGCGcGG- -5'
8031 3' -59 NC_001973.1 + 6350 0.66 0.839175
Target:  5'- uGCGGCgucgagGGGGCcgaGCCuugcgaGUCGAuCGCGCUu -3'
miRNA:   3'- gCGUUGa-----CCUCG---CGG------CAGCU-GCGCGG- -5'
8031 3' -59 NC_001973.1 + 45056 0.66 0.839175
Target:  5'- uGCggUUGuAGUgGUCGUCGAgCGCGUCg -3'
miRNA:   3'- gCGuuGACcUCG-CGGCAGCU-GCGCGG- -5'
8031 3' -59 NC_001973.1 + 36566 0.66 0.839175
Target:  5'- gGUuuUUGGcgGGCG-CGUUGACGCGCg -3'
miRNA:   3'- gCGuuGACC--UCGCgGCAGCUGCGCGg -5'
8031 3' -59 NC_001973.1 + 138866 0.66 0.838383
Target:  5'- uGCGGCUcucucucgacagGGGcacggccGCGCCGUCGAUgGUGCa -3'
miRNA:   3'- gCGUUGA------------CCU-------CGCGGCAGCUG-CGCGg -5'
8031 3' -59 NC_001973.1 + 146609 0.66 0.836796
Target:  5'- aCGCuGCUGGAGuCGCCuccguUCGACcccaccacguaauaGCuGCCg -3'
miRNA:   3'- -GCGuUGACCUC-GCGGc----AGCUG--------------CG-CGG- -5'
8031 3' -59 NC_001973.1 + 32542 0.66 0.831187
Target:  5'- uCGCgAGCUcGGcgaucGcCGCCGcCGACGcCGCCg -3'
miRNA:   3'- -GCG-UUGA-CCu----C-GCGGCaGCUGC-GCGG- -5'
8031 3' -59 NC_001973.1 + 119159 0.66 0.831187
Target:  5'- --aAGCUGG-GCaaguCCaUCGACGCGCCc -3'
miRNA:   3'- gcgUUGACCuCGc---GGcAGCUGCGCGG- -5'
8031 3' -59 NC_001973.1 + 95821 0.66 0.831187
Target:  5'- gGCAACccguucacGGGCGCgG-CGACGgGCCc -3'
miRNA:   3'- gCGUUGac------CUCGCGgCaGCUGCgCGG- -5'
8031 3' -59 NC_001973.1 + 25721 0.66 0.831187
Target:  5'- gCGCGcCgcccGCGCCGcCGGCGCgGCCu -3'
miRNA:   3'- -GCGUuGaccuCGCGGCaGCUGCG-CGG- -5'
8031 3' -59 NC_001973.1 + 59924 0.66 0.831187
Target:  5'- cCGCGcGCcGcGGCGCCGcagcgCGACGUGCUc -3'
miRNA:   3'- -GCGU-UGaCcUCGCGGCa----GCUGCGCGG- -5'
8031 3' -59 NC_001973.1 + 95429 0.66 0.831187
Target:  5'- gGCGACgcGGAGCGCgaccgCGaaaCGuACGCGCUg -3'
miRNA:   3'- gCGUUGa-CCUCGCG-----GCa--GC-UGCGCGG- -5'
8031 3' -59 NC_001973.1 + 74120 0.66 0.830378
Target:  5'- gGUGACgccGGUGCCGUCGgggaauuGCGCGCa -3'
miRNA:   3'- gCGUUGaccUCGCGGCAGC-------UGCGCGg -5'
8031 3' -59 NC_001973.1 + 45806 0.66 0.830378
Target:  5'- gGCGGCguugGGAgucaaucuaguguGCGCCGgcgCGGCGUucguggGCCu -3'
miRNA:   3'- gCGUUGa---CCU-------------CGCGGCa--GCUGCG------CGG- -5'
8031 3' -59 NC_001973.1 + 109612 0.66 0.826312
Target:  5'- cCGCAucgccaucaugacggACgUGGuGCGCgacuUCGACGCGCUg -3'
miRNA:   3'- -GCGU---------------UG-ACCuCGCGgc--AGCUGCGCGG- -5'
8031 3' -59 NC_001973.1 + 137200 0.66 0.82303
Target:  5'- uCGCGGC-GcGAGuCGCgCGgCGGCGCGUCc -3'
miRNA:   3'- -GCGUUGaC-CUC-GCG-GCaGCUGCGCGG- -5'
8031 3' -59 NC_001973.1 + 94794 0.66 0.82303
Target:  5'- uGCAACgcGGAcgGCUGUCGGucaGCGCCc -3'
miRNA:   3'- gCGUUGa-CCUcgCGGCAGCUg--CGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.