miRNA display CGI


Results 21 - 40 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8031 3' -59 NC_001973.1 + 14337 0.66 0.82303
Target:  5'- uGCAACcGGccgcacuuGGCGUgGUCGGCGUGgUCg -3'
miRNA:   3'- gCGUUGaCC--------UCGCGgCAGCUGCGC-GG- -5'
8031 3' -59 NC_001973.1 + 23925 0.66 0.82303
Target:  5'- aCGCGGCUcGAcuGCGCCGcggucgUCGGCaaGCGCUc -3'
miRNA:   3'- -GCGUUGAcCU--CGCGGC------AGCUG--CGCGG- -5'
8031 3' -59 NC_001973.1 + 94794 0.66 0.82303
Target:  5'- uGCAACgcGGAcgGCUGUCGGucaGCGCCc -3'
miRNA:   3'- gCGUUGa-CCUcgCGGCAGCUg--CGCGG- -5'
8031 3' -59 NC_001973.1 + 137200 0.66 0.82303
Target:  5'- uCGCGGC-GcGAGuCGCgCGgCGGCGCGUCc -3'
miRNA:   3'- -GCGUUGaC-CUC-GCG-GCaGCUGCGCGG- -5'
8031 3' -59 NC_001973.1 + 36838 0.66 0.82303
Target:  5'- cCGcCGACcGGccugAGgGCCGacUCGGCGCGCg -3'
miRNA:   3'- -GC-GUUGaCC----UCgCGGC--AGCUGCGCGg -5'
8031 3' -59 NC_001973.1 + 62019 0.66 0.822205
Target:  5'- gCGCAaccgcccGCUGGuGCGCCGccaccugcUCG-CGguCGCCg -3'
miRNA:   3'- -GCGU-------UGACCuCGCGGC--------AGCuGC--GCGG- -5'
8031 3' -59 NC_001973.1 + 95972 0.66 0.822205
Target:  5'- aGaCGGCgGGcGCGCUGguguccuUCGACaGCGCCg -3'
miRNA:   3'- gC-GUUGaCCuCGCGGC-------AGCUG-CGCGG- -5'
8031 3' -59 NC_001973.1 + 121234 0.66 0.819721
Target:  5'- aCGCGGCggcgcGGcGCGUCGcagaacaggguggCGACGCGCg -3'
miRNA:   3'- -GCGUUGa----CCuCGCGGCa------------GCUGCGCGg -5'
8031 3' -59 NC_001973.1 + 147068 0.66 0.814711
Target:  5'- uGCcgauCUGGcGCGUgGagGGCGCGCUg -3'
miRNA:   3'- gCGuu--GACCuCGCGgCagCUGCGCGG- -5'
8031 3' -59 NC_001973.1 + 55759 0.66 0.814711
Target:  5'- gGgAACgagGGcagaucgucucGGCGUCGcUCGGCGCGCUu -3'
miRNA:   3'- gCgUUGa--CC-----------UCGCGGC-AGCUGCGCGG- -5'
8031 3' -59 NC_001973.1 + 87121 0.66 0.814711
Target:  5'- gCGCGGCgu--GCGCgCGcCGGUGCGCCg -3'
miRNA:   3'- -GCGUUGaccuCGCG-GCaGCUGCGCGG- -5'
8031 3' -59 NC_001973.1 + 158021 0.66 0.814711
Target:  5'- -uCAAUcgGGuguGCGCCGcCGcCGCGCCc -3'
miRNA:   3'- gcGUUGa-CCu--CGCGGCaGCuGCGCGG- -5'
8031 3' -59 NC_001973.1 + 8416 0.66 0.814711
Target:  5'- gCGCGaacgGCaaGAGcCGCCGcgUCGuCGCGCCc -3'
miRNA:   3'- -GCGU----UGacCUC-GCGGC--AGCuGCGCGG- -5'
8031 3' -59 NC_001973.1 + 24301 0.66 0.814711
Target:  5'- gGCGACcacGGCGCgCGUCGACGCcgaagagguGCUg -3'
miRNA:   3'- gCGUUGaccUCGCG-GCAGCUGCG---------CGG- -5'
8031 3' -59 NC_001973.1 + 77333 0.66 0.814711
Target:  5'- aCGCcuugguuUUGGAGcCGCCGcggcacacCGACGCgGCCg -3'
miRNA:   3'- -GCGuu-----GACCUC-GCGGCa-------GCUGCG-CGG- -5'
8031 3' -59 NC_001973.1 + 96448 0.66 0.81387
Target:  5'- cCGCcguCUuGGGC-CCGUCGAcgagcauCGCGCCg -3'
miRNA:   3'- -GCGuu-GAcCUCGcGGCAGCU-------GCGCGG- -5'
8031 3' -59 NC_001973.1 + 67611 0.66 0.81387
Target:  5'- gGCGGC-GGAGCugguGCCGgccgCGuccgagaGCGUGCCg -3'
miRNA:   3'- gCGUUGaCCUCG----CGGCa---GC-------UGCGCGG- -5'
8031 3' -59 NC_001973.1 + 73604 0.66 0.812185
Target:  5'- gCGCGACccgGGcgaucaguucggacGGCucGCCGUCcGCGCGCUc -3'
miRNA:   3'- -GCGUUGa--CC--------------UCG--CGGCAGcUGCGCGG- -5'
8031 3' -59 NC_001973.1 + 53306 0.66 0.812185
Target:  5'- aGuCGAUcuUGGAG-GCCGucgucugcagggcgUCGAUGCGCCc -3'
miRNA:   3'- gC-GUUG--ACCUCgCGGC--------------AGCUGCGCGG- -5'
8031 3' -59 NC_001973.1 + 30405 0.66 0.806237
Target:  5'- gGCGGCggcGGAgGCGCCG-CGAacUGCCg -3'
miRNA:   3'- gCGUUGa--CCU-CGCGGCaGCUgcGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.