miRNA display CGI


Results 1 - 20 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8031 3' -59 NC_001973.1 + 377 0.67 0.779962
Target:  5'- cCGCAGCUcGAcCG-CGUCGAUGUGCUu -3'
miRNA:   3'- -GCGUUGAcCUcGCgGCAGCUGCGCGG- -5'
8031 3' -59 NC_001973.1 + 1203 0.66 0.839175
Target:  5'- uGCAucuuCUucGGAGuCGCCGcCGcCGcCGCCg -3'
miRNA:   3'- gCGUu---GA--CCUC-GCGGCaGCuGC-GCGG- -5'
8031 3' -59 NC_001973.1 + 3844 0.66 0.806237
Target:  5'- gGCGAUUuGGGCcgGCuCGUCGAUGUGCa -3'
miRNA:   3'- gCGUUGAcCUCG--CG-GCAGCUGCGCGg -5'
8031 3' -59 NC_001973.1 + 4197 0.83 0.102668
Target:  5'- cCGCAGCUGGAggugcauGCGCUGgaaGGCGCGCCu -3'
miRNA:   3'- -GCGUUGACCU-------CGCGGCag-CUGCGCGG- -5'
8031 3' -59 NC_001973.1 + 4650 0.75 0.340696
Target:  5'- gGCGGC-GG-GCGCCGUCGGCGaGUCg -3'
miRNA:   3'- gCGUUGaCCuCGCGGCAGCUGCgCGG- -5'
8031 3' -59 NC_001973.1 + 5313 0.72 0.500557
Target:  5'- gCGCAcuGCaGGuuGGUGCCGUCGcugUGCGCCg -3'
miRNA:   3'- -GCGU--UGaCC--UCGCGGCAGCu--GCGCGG- -5'
8031 3' -59 NC_001973.1 + 5830 0.69 0.675793
Target:  5'- uCGCcgauCUGGGcGCGUCGuUCGgcgagcgcACGCGCCg -3'
miRNA:   3'- -GCGuu--GACCU-CGCGGC-AGC--------UGCGCGG- -5'
8031 3' -59 NC_001973.1 + 6024 0.67 0.752575
Target:  5'- uCGC-GCUcgacGAGCGCgcucCGUUGACGCGCg -3'
miRNA:   3'- -GCGuUGAc---CUCGCG----GCAGCUGCGCGg -5'
8031 3' -59 NC_001973.1 + 6121 0.66 0.797616
Target:  5'- gCGCGA---GGGCGCCG-CGAUaCGCCg -3'
miRNA:   3'- -GCGUUgacCUCGCGGCaGCUGcGCGG- -5'
8031 3' -59 NC_001973.1 + 6210 0.66 0.839175
Target:  5'- gGCGGCgc-GGUGCCGgcgCGGCGC-CCu -3'
miRNA:   3'- gCGUUGaccUCGCGGCa--GCUGCGcGG- -5'
8031 3' -59 NC_001973.1 + 6350 0.66 0.839175
Target:  5'- uGCGGCgucgagGGGGCcgaGCCuugcgaGUCGAuCGCGCUu -3'
miRNA:   3'- gCGUUGa-----CCUCG---CGG------CAGCU-GCGCGG- -5'
8031 3' -59 NC_001973.1 + 6417 0.77 0.272667
Target:  5'- gCGCGGCggcGGcGCGCCGaCGAgCGCGCCc -3'
miRNA:   3'- -GCGUUGa--CCuCGCGGCaGCU-GCGCGG- -5'
8031 3' -59 NC_001973.1 + 7261 0.73 0.411748
Target:  5'- gCGCAGCgGGcucGGCGCg--CGGCGCGCCc -3'
miRNA:   3'- -GCGUUGaCC---UCGCGgcaGCUGCGCGG- -5'
8031 3' -59 NC_001973.1 + 7725 0.68 0.714711
Target:  5'- cCGCccgacugacGCUGGAGCaCCGgugCGGCGCGaaCCg -3'
miRNA:   3'- -GCGu--------UGACCUCGcGGCa--GCUGCGC--GG- -5'
8031 3' -59 NC_001973.1 + 7844 0.7 0.62645
Target:  5'- gGCGGCgcc-GCGcCCGUCGagcugGCGCGCCa -3'
miRNA:   3'- gCGUUGaccuCGC-GGCAGC-----UGCGCGG- -5'
8031 3' -59 NC_001973.1 + 7976 0.67 0.761814
Target:  5'- gCGCGAUUGu-GCGCgCGUaCGACcCGCCc -3'
miRNA:   3'- -GCGUUGACcuCGCG-GCA-GCUGcGCGG- -5'
8031 3' -59 NC_001973.1 + 8416 0.66 0.814711
Target:  5'- gCGCGaacgGCaaGAGcCGCCGcgUCGuCGCGCCc -3'
miRNA:   3'- -GCGU----UGacCUC-GCGGC--AGCuGCGCGG- -5'
8031 3' -59 NC_001973.1 + 9077 0.72 0.472046
Target:  5'- uGCAGcCUGucGCGCCGcgugagcUCGGCGCGCa -3'
miRNA:   3'- gCGUU-GACcuCGCGGC-------AGCUGCGCGg -5'
8031 3' -59 NC_001973.1 + 10317 0.67 0.788855
Target:  5'- gCGCAGCgcaGcGGGCGCuCGUugaggucggCGAUGCgGCCg -3'
miRNA:   3'- -GCGUUGa--C-CUCGCG-GCA---------GCUGCG-CGG- -5'
8031 3' -59 NC_001973.1 + 10531 0.67 0.770946
Target:  5'- aGUAGgaGGAGC-CCGgcucgaCGACGUGCUc -3'
miRNA:   3'- gCGUUgaCCUCGcGGCa-----GCUGCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.