Results 1 - 9 of 9 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8031 | 5' | -55.7 | NC_001973.1 | + | 38075 | 0.66 | 0.913639 |
Target: 5'- cGAACUcgaGGCUguCGCGGGCgUCUu-- -3' miRNA: 3'- cCUUGA---CCGGguGCGCCCGaAGAuaa -5' |
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8031 | 5' | -55.7 | NC_001973.1 | + | 36323 | 0.66 | 0.887991 |
Target: 5'- cGGccGACgcGGCCgACGCGGGCcUCg--- -3' miRNA: 3'- -CC--UUGa-CCGGgUGCGCCCGaAGauaa -5' |
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8031 | 5' | -55.7 | NC_001973.1 | + | 146076 | 0.66 | 0.887991 |
Target: 5'- cGAGCcGGCUCGgGCGGGCggggaCUAa- -3' miRNA: 3'- cCUUGaCCGGGUgCGCCCGaa---GAUaa -5' |
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8031 | 5' | -55.7 | NC_001973.1 | + | 83865 | 0.67 | 0.850819 |
Target: 5'- cGAGCUcGCCCGCGCGcGGCg------ -3' miRNA: 3'- cCUUGAcCGGGUGCGC-CCGaagauaa -5' |
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8031 | 5' | -55.7 | NC_001973.1 | + | 143021 | 0.68 | 0.834496 |
Target: 5'- -cAGCUGuGCCC-CGCGGGCUa----- -3' miRNA: 3'- ccUUGAC-CGGGuGCGCCCGAagauaa -5' |
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8031 | 5' | -55.7 | NC_001973.1 | + | 152381 | 0.68 | 0.799667 |
Target: 5'- cGGAC-GGCCgGCGCGGGCgggCg--- -3' miRNA: 3'- cCUUGaCCGGgUGCGCCCGaa-Gauaa -5' |
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8031 | 5' | -55.7 | NC_001973.1 | + | 83812 | 0.7 | 0.703108 |
Target: 5'- cGAGCUGGgCCGCGCGcGGCggagCUc-- -3' miRNA: 3'- cCUUGACCgGGUGCGC-CCGaa--GAuaa -5' |
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8031 | 5' | -55.7 | NC_001973.1 | + | 137280 | 0.71 | 0.672524 |
Target: 5'- cGGGGCUcGGCCgCGCGCGuuuuauacgaGGCUUCUu-- -3' miRNA: 3'- -CCUUGA-CCGG-GUGCGC----------CCGAAGAuaa -5' |
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8031 | 5' | -55.7 | NC_001973.1 | + | 143848 | 0.72 | 0.600384 |
Target: 5'- cGAAUUGGCCgACGCGGGaacgCUGa- -3' miRNA: 3'- cCUUGACCGGgUGCGCCCgaa-GAUaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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