miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8032 3' -54.3 NC_001973.1 + 133278 0.66 0.967249
Target:  5'- uCGGCcgc-GGcCGAgaacgcggcCGGCGGCGGCGc -3'
miRNA:   3'- -GCCGuuaaCCaGCUa--------GCCGUCGCUGC- -5'
8032 3' -54.3 NC_001973.1 + 21191 0.66 0.967249
Target:  5'- uCGGCcgg-GGUCGAUCGGguucaAGCccGAUGa -3'
miRNA:   3'- -GCCGuuaaCCAGCUAGCCg----UCG--CUGC- -5'
8032 3' -54.3 NC_001973.1 + 2832 0.66 0.967249
Target:  5'- uCGGCcgg-GGUCGAUCGGguucaAGCccGAUGa -3'
miRNA:   3'- -GCCGuuaaCCAGCUAGCCg----UCG--CUGC- -5'
8032 3' -54.3 NC_001973.1 + 2714 0.66 0.967249
Target:  5'- uCGGCcgg-GGUCGAUCGGguucaAGCccGAUGa -3'
miRNA:   3'- -GCCGuuaaCCAGCUAGCCg----UCG--CUGC- -5'
8032 3' -54.3 NC_001973.1 + 58041 0.66 0.964028
Target:  5'- gGGCucc-GG-CGG-CGGCGGCGGCu -3'
miRNA:   3'- gCCGuuaaCCaGCUaGCCGUCGCUGc -5'
8032 3' -54.3 NC_001973.1 + 96897 0.66 0.963695
Target:  5'- gCGGCGGgcGcGUCGGaucguucUCGGCcguucGGCGACa -3'
miRNA:   3'- -GCCGUUaaC-CAGCU-------AGCCG-----UCGCUGc -5'
8032 3' -54.3 NC_001973.1 + 55222 0.66 0.960592
Target:  5'- aCGGCGGa-GG-CGG-CGGCGGCGgGCGg -3'
miRNA:   3'- -GCCGUUaaCCaGCUaGCCGUCGC-UGC- -5'
8032 3' -54.3 NC_001973.1 + 124801 0.66 0.956936
Target:  5'- cCGGCGAgggccgGGgccUCGAUCGGaCGGuCGAgGa -3'
miRNA:   3'- -GCCGUUaa----CC---AGCUAGCC-GUC-GCUgC- -5'
8032 3' -54.3 NC_001973.1 + 97980 0.66 0.956936
Target:  5'- gGGCAcgacgcGGUCG--CGGuCGGCGACGu -3'
miRNA:   3'- gCCGUuaa---CCAGCuaGCC-GUCGCUGC- -5'
8032 3' -54.3 NC_001973.1 + 6391 0.66 0.956936
Target:  5'- uCGaGCAAacguuuugaUGGcCGAgugcgCGGCGGCGGCGc -3'
miRNA:   3'- -GC-CGUUa--------ACCaGCUa----GCCGUCGCUGC- -5'
8032 3' -54.3 NC_001973.1 + 22763 0.66 0.954635
Target:  5'- gGGCGAgcucgacaucgaccUGGUCGggCGGCAGUucaGCGc -3'
miRNA:   3'- gCCGUUa-------------ACCAGCuaGCCGUCGc--UGC- -5'
8032 3' -54.3 NC_001973.1 + 129335 0.66 0.953055
Target:  5'- cCGGCAAg-GGUCGAUagaGGUcaAGcCGAUGa -3'
miRNA:   3'- -GCCGUUaaCCAGCUAg--CCG--UC-GCUGC- -5'
8032 3' -54.3 NC_001973.1 + 122606 0.67 0.948945
Target:  5'- gCGGCGGagGcGUCGG-CGGCGcCGACGc -3'
miRNA:   3'- -GCCGUUaaC-CAGCUaGCCGUcGCUGC- -5'
8032 3' -54.3 NC_001973.1 + 7747 0.67 0.944603
Target:  5'- cCGGUgc--GGcgCGAaccgCGGCGGCGGCGg -3'
miRNA:   3'- -GCCGuuaaCCa-GCUa---GCCGUCGCUGC- -5'
8032 3' -54.3 NC_001973.1 + 121557 0.67 0.944603
Target:  5'- uCGGCGcgugUGGUgGAacacguacucgUCGGUcGCGGCGa -3'
miRNA:   3'- -GCCGUua--ACCAgCU-----------AGCCGuCGCUGC- -5'
8032 3' -54.3 NC_001973.1 + 35440 0.67 0.940026
Target:  5'- aCGcGCGGUc-GUCGAcgaGGCGGCGGCGc -3'
miRNA:   3'- -GC-CGUUAacCAGCUag-CCGUCGCUGC- -5'
8032 3' -54.3 NC_001973.1 + 35673 0.67 0.940026
Target:  5'- aCGGCGc--GGcCGA-CGGCGGCG-CGg -3'
miRNA:   3'- -GCCGUuaaCCaGCUaGCCGUCGCuGC- -5'
8032 3' -54.3 NC_001973.1 + 38832 0.67 0.935212
Target:  5'- cCGGCGGa-GG-CGG-CGGCGGCGAgGg -3'
miRNA:   3'- -GCCGUUaaCCaGCUaGCCGUCGCUgC- -5'
8032 3' -54.3 NC_001973.1 + 55432 0.67 0.935212
Target:  5'- gCGGCGGcgGGccCGA-CGGC-GCGGCGg -3'
miRNA:   3'- -GCCGUUaaCCa-GCUaGCCGuCGCUGC- -5'
8032 3' -54.3 NC_001973.1 + 111927 0.67 0.93016
Target:  5'- -aGUAcgUGGU-GcgCGGCGGCGACu -3'
miRNA:   3'- gcCGUuaACCAgCuaGCCGUCGCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.