miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8032 5' -56 NC_001973.1 + 59937 0.66 0.908593
Target:  5'- cGCCGC-AGCGCgacgUGCUCaaUCUGUUUGCg -3'
miRNA:   3'- -UGGUGuUCGCG----AUGAGc-GGGCGAACG- -5'
8032 5' -56 NC_001973.1 + 42265 0.66 0.908593
Target:  5'- gGCC-CGAGCuaUGCUaGCCCGCcucuggGCc -3'
miRNA:   3'- -UGGuGUUCGcgAUGAgCGGGCGaa----CG- -5'
8032 5' -56 NC_001973.1 + 6431 0.66 0.908593
Target:  5'- cGCCgACGAGCGCgcccgUCGCCggaGCcgUGCu -3'
miRNA:   3'- -UGG-UGUUCGCGaug--AGCGGg--CGa-ACG- -5'
8032 5' -56 NC_001973.1 + 18717 0.66 0.908593
Target:  5'- gACCAcCAAGCcaaCUACUgGUCCGCggaagaGCa -3'
miRNA:   3'- -UGGU-GUUCGc--GAUGAgCGGGCGaa----CG- -5'
8032 5' -56 NC_001973.1 + 119488 0.66 0.902369
Target:  5'- cACCaACAAGCGCaaACgcaaagccgCGCCCGCcccGCc -3'
miRNA:   3'- -UGG-UGUUCGCGa-UGa--------GCGGGCGaa-CG- -5'
8032 5' -56 NC_001973.1 + 74528 0.66 0.902369
Target:  5'- cACCGCGuGCGa-GC-CGCCCGCcacGCa -3'
miRNA:   3'- -UGGUGUuCGCgaUGaGCGGGCGaa-CG- -5'
8032 5' -56 NC_001973.1 + 158929 0.66 0.902369
Target:  5'- cGCCGCGcGCGaccgaGC-CGCCCGCguccGCg -3'
miRNA:   3'- -UGGUGUuCGCga---UGaGCGGGCGaa--CG- -5'
8032 5' -56 NC_001973.1 + 23562 0.66 0.901733
Target:  5'- gACCGCAgccggccGGCGg-ACgcgcCGCCCGCgcUGCg -3'
miRNA:   3'- -UGGUGU-------UCGCgaUGa---GCGGGCGa-ACG- -5'
8032 5' -56 NC_001973.1 + 37725 0.66 0.89591
Target:  5'- cCCAcCGAGUggaguugaccacGCUGCUCGCCUgGCggcgGCa -3'
miRNA:   3'- uGGU-GUUCG------------CGAUGAGCGGG-CGaa--CG- -5'
8032 5' -56 NC_001973.1 + 43005 0.66 0.89591
Target:  5'- --uGCGAGCGCcgACUCGCCgCGUc-GCc -3'
miRNA:   3'- uggUGUUCGCGa-UGAGCGG-GCGaaCG- -5'
8032 5' -56 NC_001973.1 + 48704 0.66 0.89591
Target:  5'- aGCaCAuCAAGCGCgcgcucgagucgUGCUUGCgCCGCU-GCu -3'
miRNA:   3'- -UG-GU-GUUCGCG------------AUGAGCG-GGCGAaCG- -5'
8032 5' -56 NC_001973.1 + 4807 0.66 0.89591
Target:  5'- uCCACGAGCGCgUACggCGacaCGCUgucGCg -3'
miRNA:   3'- uGGUGUUCGCG-AUGa-GCgg-GCGAa--CG- -5'
8032 5' -56 NC_001973.1 + 158374 0.66 0.89591
Target:  5'- cCCGCGcccGCGCcgACUCGUCCGaucGCg -3'
miRNA:   3'- uGGUGUu--CGCGa-UGAGCGGGCgaaCG- -5'
8032 5' -56 NC_001973.1 + 47813 0.66 0.89591
Target:  5'- -aCGCGuGCGCcaaaUCGCCCGCccGCu -3'
miRNA:   3'- ugGUGUuCGCGaug-AGCGGGCGaaCG- -5'
8032 5' -56 NC_001973.1 + 78630 0.66 0.895251
Target:  5'- gGCCGCGGGCGCUcgaggcgAUUCG-CCGCc--- -3'
miRNA:   3'- -UGGUGUUCGCGA-------UGAGCgGGCGaacg -5'
8032 5' -56 NC_001973.1 + 99178 0.66 0.889219
Target:  5'- cCCGCGcGGCGCcaccauggugUACaCGCCCGCgUGUa -3'
miRNA:   3'- uGGUGU-UCGCG----------AUGaGCGGGCGaACG- -5'
8032 5' -56 NC_001973.1 + 83386 0.66 0.888537
Target:  5'- cGCCAugauCAGGgGCUuuuucauACUCGCCuCGUcgGCg -3'
miRNA:   3'- -UGGU----GUUCgCGA-------UGAGCGG-GCGaaCG- -5'
8032 5' -56 NC_001973.1 + 93511 0.66 0.887853
Target:  5'- uGCCGUGAacGCGCUGCUCGCCaaggacaacaUUGCg -3'
miRNA:   3'- -UGGUGUU--CGCGAUGAGCGGgcg-------AACG- -5'
8032 5' -56 NC_001973.1 + 96486 0.66 0.886478
Target:  5'- aGCCGCAccaggucgaacuuGCGCUGCcgcaUCGUgCGCUUcGCu -3'
miRNA:   3'- -UGGUGUu------------CGCGAUG----AGCGgGCGAA-CG- -5'
8032 5' -56 NC_001973.1 + 124239 0.66 0.885095
Target:  5'- gGCCGCcguuuacgAAGCGCUGCUgugcauggacguggGCCCGUcgGCc -3'
miRNA:   3'- -UGGUG--------UUCGCGAUGAg-------------CGGGCGaaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.