Results 1 - 10 of 10 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 8033 | 3' | -51.9 | NC_001973.1 | + | 8149 | 0.66 | 0.980708 |
|
Target: 5'- uGACcUGuuucGcGAACGGCACCg--UCGGCg -3' miRNA: 3'- -UUGaACu---C-CUUGUCGUGGagaAGCCG- -5' |
|||||||
| 8033 | 3' | -51.9 | NC_001973.1 | + | 146002 | 0.66 | 0.978414 |
|
Target: 5'- cGGCUcGGGGAGCGGguCCgc--CGGCu -3' miRNA: 3'- -UUGAaCUCCUUGUCguGGagaaGCCG- -5' |
|||||||
| 8033 | 3' | -51.9 | NC_001973.1 | + | 147902 | 0.67 | 0.975925 |
|
Target: 5'- cAACUgc---AGCGGCGCCUCUUgaCGGCg -3' miRNA: 3'- -UUGAacuccUUGUCGUGGAGAA--GCCG- -5' |
|||||||
| 8033 | 3' | -51.9 | NC_001973.1 | + | 16894 | 0.67 | 0.970326 |
|
Target: 5'- aAACUUGuucgcgccGGcGGCGGCgGCCUC-UCGGCg -3' miRNA: 3'- -UUGAACu-------CC-UUGUCG-UGGAGaAGCCG- -5' |
|||||||
| 8033 | 3' | -51.9 | NC_001973.1 | + | 96320 | 0.67 | 0.969103 |
|
Target: 5'- --gUUGAGGAugGuGCGCCUCgugcagaaacaGGCg -3' miRNA: 3'- uugAACUCCUugU-CGUGGAGaag--------CCG- -5' |
|||||||
| 8033 | 3' | -51.9 | NC_001973.1 | + | 28993 | 0.67 | 0.963852 |
|
Target: 5'- ----cGGGGAAgGGCGCCgg--CGGCu -3' miRNA: 3'- uugaaCUCCUUgUCGUGGagaaGCCG- -5' |
|||||||
| 8033 | 3' | -51.9 | NC_001973.1 | + | 23798 | 0.68 | 0.960271 |
|
Target: 5'- ----cGAGu-ACGGcCACUUCUUCGGCg -3' miRNA: 3'- uugaaCUCcuUGUC-GUGGAGAAGCCG- -5' |
|||||||
| 8033 | 3' | -51.9 | NC_001973.1 | + | 88870 | 0.68 | 0.952389 |
|
Target: 5'- --gUUGAacGcGAGCGGCGCCUCgUCGuGCa -3' miRNA: 3'- uugAACU--C-CUUGUCGUGGAGaAGC-CG- -5' |
|||||||
| 8033 | 3' | -51.9 | NC_001973.1 | + | 89359 | 0.73 | 0.74249 |
|
Target: 5'- ---aUGAGGucCAGgGCCUCUUUGGUg -3' miRNA: 3'- uugaACUCCuuGUCgUGGAGAAGCCG- -5' |
|||||||
| 8033 | 3' | -51.9 | NC_001973.1 | + | 81321 | 0.74 | 0.711811 |
|
Target: 5'- cAGCUUGAGGAACAGC-UCgac-CGGCa -3' miRNA: 3'- -UUGAACUCCUUGUCGuGGagaaGCCG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home