miRNA display CGI


Results 1 - 20 of 41 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8033 5' -59.1 NC_001973.1 + 61166 0.66 0.835691
Target:  5'- cGCGUCGggcGGUCGCCgAcgcuccUCGCUGAa- -3'
miRNA:   3'- -CGCGGCa--CCAGCGGgUa-----AGCGGCUcc -5'
8033 5' -59.1 NC_001973.1 + 96213 0.66 0.835691
Target:  5'- uGCGCCaccagaGUcGcCGCCCcgUCGCCGGa- -3'
miRNA:   3'- -CGCGG------CAcCaGCGGGuaAGCGGCUcc -5'
8033 5' -59.1 NC_001973.1 + 43009 0.66 0.835691
Target:  5'- aGCGCCGac-UCGCCgCGU-CGCCGAc- -3'
miRNA:   3'- -CGCGGCaccAGCGG-GUAaGCGGCUcc -5'
8033 5' -59.1 NC_001973.1 + 74758 0.66 0.833305
Target:  5'- -aGCCGUcGUCGCCgCGaauggaaaacuuggUgcggUCGCCGGGGu -3'
miRNA:   3'- cgCGGCAcCAGCGG-GU--------------A----AGCGGCUCC- -5'
8033 5' -59.1 NC_001973.1 + 3889 0.66 0.827679
Target:  5'- gGCGaCCGagGcGUCGCUCug-CGCCGGGu -3'
miRNA:   3'- -CGC-GGCa-C-CAGCGGGuaaGCGGCUCc -5'
8033 5' -59.1 NC_001973.1 + 5678 0.66 0.827679
Target:  5'- cGCGUCGcUGccCGCCCGcuUUCG-CGAGGa -3'
miRNA:   3'- -CGCGGC-ACcaGCGGGU--AAGCgGCUCC- -5'
8033 5' -59.1 NC_001973.1 + 109412 0.66 0.811168
Target:  5'- gGCGCCGgcgcGUCGUCCAa--GUCGAGc -3'
miRNA:   3'- -CGCGGCac--CAGCGGGUaagCGGCUCc -5'
8033 5' -59.1 NC_001973.1 + 42078 0.66 0.811168
Target:  5'- cGCGCCGcGGUgCGCUCGU---CCGAGa -3'
miRNA:   3'- -CGCGGCaCCA-GCGGGUAagcGGCUCc -5'
8033 5' -59.1 NC_001973.1 + 47986 0.67 0.805245
Target:  5'- cGCGCCGcgcucucaguucguuUCGCCCuUUCGUCGAGu -3'
miRNA:   3'- -CGCGGCacc------------AGCGGGuAAGCGGCUCc -5'
8033 5' -59.1 NC_001973.1 + 65827 0.67 0.802684
Target:  5'- uGCGCCGaucgcaUGGacgaGCCCGU-CGaCGAGGa -3'
miRNA:   3'- -CGCGGC------ACCag--CGGGUAaGCgGCUCC- -5'
8033 5' -59.1 NC_001973.1 + 67623 0.67 0.802684
Target:  5'- gGUGCCGgccgCGUCCGagagcgUGCCGAGGa -3'
miRNA:   3'- -CGCGGCaccaGCGGGUaa----GCGGCUCC- -5'
8033 5' -59.1 NC_001973.1 + 145597 0.67 0.767402
Target:  5'- cGCgGCCGUGGaccugagCGUCC--UCGUCGAGa -3'
miRNA:   3'- -CG-CGGCACCa------GCGGGuaAGCGGCUCc -5'
8033 5' -59.1 NC_001973.1 + 45377 0.68 0.752764
Target:  5'- -aGCCGccuugcucgagcagcUGGUCGCCCAccacgaacuugUCGCCGGc- -3'
miRNA:   3'- cgCGGC---------------ACCAGCGGGUa----------AGCGGCUcc -5'
8033 5' -59.1 NC_001973.1 + 10167 0.68 0.749064
Target:  5'- aGCGCCGggUGGUCGaCCCGcacgaaGCCGucgcGGc -3'
miRNA:   3'- -CGCGGC--ACCAGC-GGGUaag---CGGCu---CC- -5'
8033 5' -59.1 NC_001973.1 + 94924 0.68 0.749064
Target:  5'- -gGUgGUGGcCGCCUAcUUCGUCGAGu -3'
miRNA:   3'- cgCGgCACCaGCGGGU-AAGCGGCUCc -5'
8033 5' -59.1 NC_001973.1 + 8436 0.68 0.739748
Target:  5'- cGCGUCGUcG-CGCCCGUcgacgaaccgcUCGCCGAc- -3'
miRNA:   3'- -CGCGGCAcCaGCGGGUA-----------AGCGGCUcc -5'
8033 5' -59.1 NC_001973.1 + 41705 0.68 0.739748
Target:  5'- aGCGCaCGU--UCGCCaCGUgCGCCGAGu -3'
miRNA:   3'- -CGCG-GCAccAGCGG-GUAaGCGGCUCc -5'
8033 5' -59.1 NC_001973.1 + 18806 0.68 0.739748
Target:  5'- cGCGgCGUuG-CGCUCGUUCGCCGugcuGGc -3'
miRNA:   3'- -CGCgGCAcCaGCGGGUAAGCGGCu---CC- -5'
8033 5' -59.1 NC_001973.1 + 71740 0.68 0.730346
Target:  5'- gGCGcCCGcGGcCGCCCcggccgCGCCGGGc -3'
miRNA:   3'- -CGC-GGCaCCaGCGGGuaa---GCGGCUCc -5'
8033 5' -59.1 NC_001973.1 + 6429 0.68 0.720866
Target:  5'- cGCGCCGacgagcgCGCCCGU-CGCCGGa- -3'
miRNA:   3'- -CGCGGCacca---GCGGGUAaGCGGCUcc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.