miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8033 5' -59.1 NC_001973.1 + 57225 0.68 0.720866
Target:  5'- aCGUCGaGGUCGCCgA--CGCgGAGGa -3'
miRNA:   3'- cGCGGCaCCAGCGGgUaaGCGgCUCC- -5'
8033 5' -59.1 NC_001973.1 + 21285 0.68 0.711315
Target:  5'- cCGCCGggccGUCGCUCAgUCGUCGGGc -3'
miRNA:   3'- cGCGGCac--CAGCGGGUaAGCGGCUCc -5'
8033 5' -59.1 NC_001973.1 + 80060 0.68 0.698807
Target:  5'- cGCGCCG-GGUccuccucuuugcggCGCUUGgccgUCGUCGAGGu -3'
miRNA:   3'- -CGCGGCaCCA--------------GCGGGUa---AGCGGCUCC- -5'
8033 5' -59.1 NC_001973.1 + 55631 0.69 0.682323
Target:  5'- aGCGCgCGUgcaGGUCGCUCAagcgcgucggaUgggaGCCGAGGc -3'
miRNA:   3'- -CGCG-GCA---CCAGCGGGU-----------Aag--CGGCUCC- -5'
8033 5' -59.1 NC_001973.1 + 3380 0.69 0.682323
Target:  5'- uCGCCGUGGUUGCCgag-CGCCa--- -3'
miRNA:   3'- cGCGGCACCAGCGGguaaGCGGcucc -5'
8033 5' -59.1 NC_001973.1 + 13079 0.69 0.672572
Target:  5'- -aGCCGUGGUgGCgCAgaaaaCCGAGGa -3'
miRNA:   3'- cgCGGCACCAgCGgGUaagc-GGCUCC- -5'
8033 5' -59.1 NC_001973.1 + 158768 0.7 0.62351
Target:  5'- cGCGCCGaccuacaCGCCCgacgcccuGUUCGCCGAGa -3'
miRNA:   3'- -CGCGGCacca---GCGGG--------UAAGCGGCUCc -5'
8033 5' -59.1 NC_001973.1 + 54665 0.7 0.62351
Target:  5'- aCGCgCGU-GUCGCCCAcgcccaccUCGCCGAuGGg -3'
miRNA:   3'- cGCG-GCAcCAGCGGGUa-------AGCGGCU-CC- -5'
8033 5' -59.1 NC_001973.1 + 42105 0.7 0.603879
Target:  5'- aGCGCCGccGUCGCgCGacacUUUGCCGAGc -3'
miRNA:   3'- -CGCGGCacCAGCGgGU----AAGCGGCUCc -5'
8033 5' -59.1 NC_001973.1 + 75951 0.7 0.584324
Target:  5'- aGUGCUGcaaaaaGGagcugCGCUCGUUCGUCGAGGg -3'
miRNA:   3'- -CGCGGCa-----CCa----GCGGGUAAGCGGCUCC- -5'
8033 5' -59.1 NC_001973.1 + 137014 0.71 0.574591
Target:  5'- uGCGCCG-GGUCGCCgAagCGCCu--- -3'
miRNA:   3'- -CGCGGCaCCAGCGGgUaaGCGGcucc -5'
8033 5' -59.1 NC_001973.1 + 158702 0.71 0.574591
Target:  5'- cGCGCCuaccGaCGCCCuGUUCGCCGAGa -3'
miRNA:   3'- -CGCGGcac-CaGCGGG-UAAGCGGCUCc -5'
8033 5' -59.1 NC_001973.1 + 7309 0.71 0.571679
Target:  5'- cGCGCUGUcGGUgaacgugcgcggccCGCCCGUguuugUCGUCGAGa -3'
miRNA:   3'- -CGCGGCA-CCA--------------GCGGGUA-----AGCGGCUCc -5'
8033 5' -59.1 NC_001973.1 + 134337 0.72 0.507819
Target:  5'- gGCGUguaCGUGGUggCGCUCGa-CGCCGAGGg -3'
miRNA:   3'- -CGCG---GCACCA--GCGGGUaaGCGGCUCC- -5'
8033 5' -59.1 NC_001973.1 + 62614 0.73 0.462194
Target:  5'- cGCGUCGUGGUCGaCgCGcgCGCCGAc- -3'
miRNA:   3'- -CGCGGCACCAGC-GgGUaaGCGGCUcc -5'
8033 5' -59.1 NC_001973.1 + 109160 0.74 0.410443
Target:  5'- -aGCCGggcgagccGGUCGCCCGcgcgcUCGCCGAGc -3'
miRNA:   3'- cgCGGCa-------CCAGCGGGUa----AGCGGCUCc -5'
8033 5' -59.1 NC_001973.1 + 21503 0.74 0.410443
Target:  5'- cCGCCGacucgaGGUUGCCCAggUCGCCGAc- -3'
miRNA:   3'- cGCGGCa-----CCAGCGGGUa-AGCGGCUcc -5'
8033 5' -59.1 NC_001973.1 + 21555 0.74 0.402173
Target:  5'- cGCGCCGUGGUC-CCgg--CGCgCGGGGu -3'
miRNA:   3'- -CGCGGCACCAGcGGguaaGCG-GCUCC- -5'
8033 5' -59.1 NC_001973.1 + 119205 0.74 0.385953
Target:  5'- aGCGCgGcGGcUCGCCCug-CGUCGAGGu -3'
miRNA:   3'- -CGCGgCaCC-AGCGGGuaaGCGGCUCC- -5'
8033 5' -59.1 NC_001973.1 + 89590 0.74 0.385953
Target:  5'- aGCGgCGUGGUCGCCaCGUacacgUgGCCGGGc -3'
miRNA:   3'- -CGCgGCACCAGCGG-GUA-----AgCGGCUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.