miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8034 3' -54.3 NC_001973.1 + 106413 0.66 0.967249
Target:  5'- uUCGUGCgGCGcGACGCCgaGCGCgGCGc -3'
miRNA:   3'- gAGCAUG-UGC-UUGCGGg-UGUGgUGCa -5'
8034 3' -54.3 NC_001973.1 + 37341 0.66 0.967249
Target:  5'- uUCGU-CACGAGCccggagacgaGCCU-CGCCACGa -3'
miRNA:   3'- gAGCAuGUGCUUG----------CGGGuGUGGUGCa -5'
8034 3' -54.3 NC_001973.1 + 36290 0.66 0.967249
Target:  5'- -aCGaAUGCGAGCGCgCCuacaacacggGCGCCGCGg -3'
miRNA:   3'- gaGCaUGUGCUUGCG-GG----------UGUGGUGCa -5'
8034 3' -54.3 NC_001973.1 + 120795 0.66 0.967249
Target:  5'- -gCGUGCGCGcGCuGCUgaCGCACUACGa -3'
miRNA:   3'- gaGCAUGUGCuUG-CGG--GUGUGGUGCa -5'
8034 3' -54.3 NC_001973.1 + 45859 0.66 0.967249
Target:  5'- -gCGU-CGCGGGCGCgCGCuccucgGCCGCGg -3'
miRNA:   3'- gaGCAuGUGCUUGCGgGUG------UGGUGCa -5'
8034 3' -54.3 NC_001973.1 + 87117 0.66 0.966937
Target:  5'- -gCGUGCGCGGcgugcgcGCGCCgguGCGCCGCc- -3'
miRNA:   3'- gaGCAUGUGCU-------UGCGGg--UGUGGUGca -5'
8034 3' -54.3 NC_001973.1 + 117187 0.66 0.966305
Target:  5'- -cCGUGCACGugcAUGCCCACcucguagaccaagcGCgGCGg -3'
miRNA:   3'- gaGCAUGUGCu--UGCGGGUG--------------UGgUGCa -5'
8034 3' -54.3 NC_001973.1 + 123345 0.66 0.966305
Target:  5'- gCUCcaGCACGGACgGCCguuugcggggaucgCACGCCGCGc -3'
miRNA:   3'- -GAGcaUGUGCUUG-CGG--------------GUGUGGUGCa -5'
8034 3' -54.3 NC_001973.1 + 44541 0.66 0.964028
Target:  5'- -aCG-ACgACGAGCGCCgGCGCUGCa- -3'
miRNA:   3'- gaGCaUG-UGCUUGCGGgUGUGGUGca -5'
8034 3' -54.3 NC_001973.1 + 87595 0.66 0.964028
Target:  5'- gCUCGgucUGCACGc-CGCCCAUGCgCAUGa -3'
miRNA:   3'- -GAGC---AUGUGCuuGCGGGUGUG-GUGCa -5'
8034 3' -54.3 NC_001973.1 + 106821 0.66 0.964028
Target:  5'- gCUUGcgcccGCGCuuGCGCCCGCGcCCGCGc -3'
miRNA:   3'- -GAGCa----UGUGcuUGCGGGUGU-GGUGCa -5'
8034 3' -54.3 NC_001973.1 + 115447 0.66 0.964028
Target:  5'- uUgGUACAagggggacuuCGAGCGaCUGCGCCGCGUg -3'
miRNA:   3'- gAgCAUGU----------GCUUGCgGGUGUGGUGCA- -5'
8034 3' -54.3 NC_001973.1 + 31234 0.66 0.964028
Target:  5'- -aCGgGCGCGAGCGCCUuCACguUGUc -3'
miRNA:   3'- gaGCaUGUGCUUGCGGGuGUGguGCA- -5'
8034 3' -54.3 NC_001973.1 + 7981 0.66 0.964028
Target:  5'- aUUGUGCGCGcguACGaCCCGC-CCGCc- -3'
miRNA:   3'- gAGCAUGUGCu--UGC-GGGUGuGGUGca -5'
8034 3' -54.3 NC_001973.1 + 10359 0.66 0.960592
Target:  5'- uUCG-GCugGca-GCCCAcCGCCACGUc -3'
miRNA:   3'- gAGCaUGugCuugCGGGU-GUGGUGCA- -5'
8034 3' -54.3 NC_001973.1 + 22423 0.66 0.960592
Target:  5'- -aCG-ACGCcgccGCGCCCGCGcCCACGg -3'
miRNA:   3'- gaGCaUGUGcu--UGCGGGUGU-GGUGCa -5'
8034 3' -54.3 NC_001973.1 + 34195 0.66 0.960592
Target:  5'- uUCGUugaGCGCGuugGACGUCUugGCCAgGUc -3'
miRNA:   3'- gAGCA---UGUGC---UUGCGGGugUGGUgCA- -5'
8034 3' -54.3 NC_001973.1 + 109582 0.66 0.960592
Target:  5'- uUCGgGCGCGAGcCGUCCACcagucugucGCCGCa- -3'
miRNA:   3'- gAGCaUGUGCUU-GCGGGUG---------UGGUGca -5'
8034 3' -54.3 NC_001973.1 + 121512 0.66 0.960592
Target:  5'- gUCGUucaGCGCGAACgccgccagcuuGCCCACcACCgaGCGg -3'
miRNA:   3'- gAGCA---UGUGCUUG-----------CGGGUG-UGG--UGCa -5'
8034 3' -54.3 NC_001973.1 + 53323 0.66 0.960237
Target:  5'- gUCGUcuGCAgGGcgucgauGCGCCCGCGCCGg-- -3'
miRNA:   3'- gAGCA--UGUgCU-------UGCGGGUGUGGUgca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.