miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8034 5' -60.1 NC_001973.1 + 104246 0.66 0.822119
Target:  5'- uGCGCGUCcgucaGCuguUCGGCGgCGGCGcCGc -3'
miRNA:   3'- -CGUGCAGc----CGc--AGCCGCaGCCGCaGC- -5'
8034 5' -60.1 NC_001973.1 + 87969 0.66 0.822119
Target:  5'- uGUACGU-GGCgGUCGGCccGUCGGuCG-CGu -3'
miRNA:   3'- -CGUGCAgCCG-CAGCCG--CAGCC-GCaGC- -5'
8034 5' -60.1 NC_001973.1 + 130787 0.66 0.813941
Target:  5'- gGCGCGUaggauuuuacGCGUCGGC--CGGgGUCGa -3'
miRNA:   3'- -CGUGCAgc--------CGCAGCCGcaGCCgCAGC- -5'
8034 5' -60.1 NC_001973.1 + 107347 0.66 0.813941
Target:  5'- cGCACGUCcacGCccccCGGCGUCGGCc--- -3'
miRNA:   3'- -CGUGCAGc--CGca--GCCGCAGCCGcagc -5'
8034 5' -60.1 NC_001973.1 + 139897 0.66 0.813941
Target:  5'- aGCGCGU-GGUGUCGGUGcUGcGCGcCa -3'
miRNA:   3'- -CGUGCAgCCGCAGCCGCaGC-CGCaGc -5'
8034 5' -60.1 NC_001973.1 + 121577 0.66 0.813941
Target:  5'- cGUAcuCGUCGGuCG-CGGCGaCcGCGUCGa -3'
miRNA:   3'- -CGU--GCAGCC-GCaGCCGCaGcCGCAGC- -5'
8034 5' -60.1 NC_001973.1 + 95534 0.66 0.813941
Target:  5'- aGCGCcaUCGGCGcCGGCGacgacaagaUCGcCGUCGu -3'
miRNA:   3'- -CGUGc-AGCCGCaGCCGC---------AGCcGCAGC- -5'
8034 5' -60.1 NC_001973.1 + 39408 0.66 0.805615
Target:  5'- cGCGCcagGUCGGcCG-CGGUGagGcGCGUCGc -3'
miRNA:   3'- -CGUG---CAGCC-GCaGCCGCagC-CGCAGC- -5'
8034 5' -60.1 NC_001973.1 + 41215 0.66 0.797148
Target:  5'- aGgGCGUU--UGUUGGCGcUUGGCGUCGu -3'
miRNA:   3'- -CgUGCAGccGCAGCCGC-AGCCGCAGC- -5'
8034 5' -60.1 NC_001973.1 + 91541 0.66 0.797148
Target:  5'- -gACGcCGGCGguUCGuCGgCGGCGUCGc -3'
miRNA:   3'- cgUGCaGCCGC--AGCcGCaGCCGCAGC- -5'
8034 5' -60.1 NC_001973.1 + 132450 0.66 0.797148
Target:  5'- -gGCGcCGGCGg-GGCG-CGGCcucGUCGg -3'
miRNA:   3'- cgUGCaGCCGCagCCGCaGCCG---CAGC- -5'
8034 5' -60.1 NC_001973.1 + 130979 0.66 0.788547
Target:  5'- aCGCGUCGGCGagGGuCGaUUGGagGUCa -3'
miRNA:   3'- cGUGCAGCCGCagCC-GC-AGCCg-CAGc -5'
8034 5' -60.1 NC_001973.1 + 37829 0.66 0.788547
Target:  5'- --uCGUgGGCGUCGucgcccGCGUCGuCGUCGc -3'
miRNA:   3'- cguGCAgCCGCAGC------CGCAGCcGCAGC- -5'
8034 5' -60.1 NC_001973.1 + 24285 0.66 0.779819
Target:  5'- gGCGCcUCGGCGaaUgGGCGaccacggCGcGCGUCGa -3'
miRNA:   3'- -CGUGcAGCCGC--AgCCGCa------GC-CGCAGC- -5'
8034 5' -60.1 NC_001973.1 + 38336 0.66 0.779819
Target:  5'- aCAUGgCGGCGUcagugccgcCGGCGgCGGCGaCGg -3'
miRNA:   3'- cGUGCaGCCGCA---------GCCGCaGCCGCaGC- -5'
8034 5' -60.1 NC_001973.1 + 79715 0.66 0.779819
Target:  5'- gGCGCGUCGG-GUCGGCaccaagaCGGgauagcgcaCGUCGu -3'
miRNA:   3'- -CGUGCAGCCgCAGCCGca-----GCC---------GCAGC- -5'
8034 5' -60.1 NC_001973.1 + 130079 0.66 0.779819
Target:  5'- cGCAaugUGGacaGUCGGUGUaauagUGGCGUCGa -3'
miRNA:   3'- -CGUgcaGCCg--CAGCCGCA-----GCCGCAGC- -5'
8034 5' -60.1 NC_001973.1 + 94403 0.66 0.776294
Target:  5'- uCGCGgcccgCGGCGccgcccggaccggCGGCGUUGGCccGUCGc -3'
miRNA:   3'- cGUGCa----GCCGCa------------GCCGCAGCCG--CAGC- -5'
8034 5' -60.1 NC_001973.1 + 145043 0.67 0.762015
Target:  5'- aGCGCGUCGaGCGccgacUCGGaacaCGUCaagaGCGUCGu -3'
miRNA:   3'- -CGUGCAGC-CGC-----AGCC----GCAGc---CGCAGC- -5'
8034 5' -60.1 NC_001973.1 + 74574 0.67 0.762015
Target:  5'- -uGCG-CGGCGgCGGCGUCGuccuCGUCc -3'
miRNA:   3'- cgUGCaGCCGCaGCCGCAGCc---GCAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.