miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8035 5' -59.5 NC_001973.1 + 56534 0.66 0.836014
Target:  5'- ----cUCGggcgGGGCgGGCUCGGCGCc -3'
miRNA:   3'- gcuuuAGCag--CCCGgCCGGGCUGCGc -5'
8035 5' -59.5 NC_001973.1 + 56507 0.66 0.836014
Target:  5'- ----cUCGggcgGGGCgGGCUCGGCGCc -3'
miRNA:   3'- gcuuuAGCag--CCCGgCCGGGCUGCGc -5'
8035 5' -59.5 NC_001973.1 + 56480 0.66 0.836014
Target:  5'- ----cUCGggcgGGGCgGGCUCGGCGCc -3'
miRNA:   3'- gcuuuAGCag--CCCGgCCGGGCUGCGc -5'
8035 5' -59.5 NC_001973.1 + 14547 0.66 0.836014
Target:  5'- aCGu--UCGuUCGacGGCCGGCC-GGCGCa -3'
miRNA:   3'- -GCuuuAGC-AGC--CCGGCCGGgCUGCGc -5'
8035 5' -59.5 NC_001973.1 + 56453 0.66 0.836014
Target:  5'- ----cUCGggcgGGGCgGGCUCGGCGCc -3'
miRNA:   3'- gcuuuAGCag--CCCGgCCGGGCUGCGc -5'
8035 5' -59.5 NC_001973.1 + 130343 0.66 0.835224
Target:  5'- aGAAAUCGUCGaucgaGGCCGccGCCCucgucauugcaauGGCGUa -3'
miRNA:   3'- gCUUUAGCAGC-----CCGGC--CGGG-------------CUGCGc -5'
8035 5' -59.5 NC_001973.1 + 4921 0.66 0.828041
Target:  5'- aCGGAAaCGUC-GGCgGGCUCGuCGCc -3'
miRNA:   3'- -GCUUUaGCAGcCCGgCCGGGCuGCGc -5'
8035 5' -59.5 NC_001973.1 + 32385 0.66 0.827235
Target:  5'- cCGAAAUCGaCgGGGCUGcuccacggcgacaGCCCGGCGa- -3'
miRNA:   3'- -GCUUUAGCaG-CCCGGC-------------CGGGCUGCgc -5'
8035 5' -59.5 NC_001973.1 + 7257 0.66 0.819905
Target:  5'- aGAug-CGcagCGGGCuCGGCgCgCGGCGCGc -3'
miRNA:   3'- gCUuuaGCa--GCCCG-GCCG-G-GCUGCGC- -5'
8035 5' -59.5 NC_001973.1 + 7836 0.66 0.819905
Target:  5'- uGAGAaCGggCGGcGCCGcGCCCGucgagcugGCGCGc -3'
miRNA:   3'- gCUUUaGCa-GCC-CGGC-CGGGC--------UGCGC- -5'
8035 5' -59.5 NC_001973.1 + 18128 0.66 0.819905
Target:  5'- -cAAGUUGUCGGcGCCGauGCCC-ACGCc -3'
miRNA:   3'- gcUUUAGCAGCC-CGGC--CGGGcUGCGc -5'
8035 5' -59.5 NC_001973.1 + 6436 0.66 0.819083
Target:  5'- aCGAGcgcgcccGUCGcCGGaGCCGuGCUCG-CGCGu -3'
miRNA:   3'- -GCUU-------UAGCaGCC-CGGC-CGGGCuGCGC- -5'
8035 5' -59.5 NC_001973.1 + 145988 0.66 0.819083
Target:  5'- uCGAAgcAUCGagccggcUCGGggagcggguccGCCGGCUCGAgCGCGg -3'
miRNA:   3'- -GCUU--UAGC-------AGCC-----------CGGCCGGGCU-GCGC- -5'
8035 5' -59.5 NC_001973.1 + 95681 0.66 0.811613
Target:  5'- -----cCGUCGuGG-CGGCCCGACGa- -3'
miRNA:   3'- gcuuuaGCAGC-CCgGCCGGGCUGCgc -5'
8035 5' -59.5 NC_001973.1 + 8061 0.66 0.803172
Target:  5'- ----cUCGUCGcGCUGGCgCuCGGCGCGc -3'
miRNA:   3'- gcuuuAGCAGCcCGGCCG-G-GCUGCGC- -5'
8035 5' -59.5 NC_001973.1 + 121284 0.66 0.803172
Target:  5'- gCGAAAU--UCGcGGCCGucGCCCGcgGCGCGc -3'
miRNA:   3'- -GCUUUAgcAGC-CCGGC--CGGGC--UGCGC- -5'
8035 5' -59.5 NC_001973.1 + 72818 0.66 0.794589
Target:  5'- aCGAuGUUGaCGaGGCCGGCggCCGcCGCGc -3'
miRNA:   3'- -GCUuUAGCaGC-CCGGCCG--GGCuGCGC- -5'
8035 5' -59.5 NC_001973.1 + 10701 0.66 0.794589
Target:  5'- aCGAucUCGgCGGG-CGGCUCGAUgaGCGg -3'
miRNA:   3'- -GCUuuAGCaGCCCgGCCGGGCUG--CGC- -5'
8035 5' -59.5 NC_001973.1 + 61167 0.67 0.785872
Target:  5'- -----gCGUCGGG-CGGUcgCCGACGCu -3'
miRNA:   3'- gcuuuaGCAGCCCgGCCG--GGCUGCGc -5'
8035 5' -59.5 NC_001973.1 + 103692 0.67 0.784993
Target:  5'- aCGAGGUuuUGUUaaaGGaagagauGCCGGCCCgGGCGCGg -3'
miRNA:   3'- -GCUUUA--GCAG---CC-------CGGCCGGG-CUGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.