miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8036 3' -60.3 NC_001973.1 + 99794 0.66 0.7391
Target:  5'- --aCUCGGUGCGAUUGCCGUUUucGUAAa -3'
miRNA:   3'- aggGGGUCGCGCUGGCGGCAAA--CGUU- -5'
8036 3' -60.3 NC_001973.1 + 129795 0.66 0.729508
Target:  5'- gUCgUCCuGCGCG-CCGUCGcccUUUGCAAa -3'
miRNA:   3'- -AGgGGGuCGCGCuGGCGGC---AAACGUU- -5'
8036 3' -60.3 NC_001973.1 + 107359 0.66 0.719835
Target:  5'- cCCCCCGGCGuCGGCCGagaCGag-GaCGAg -3'
miRNA:   3'- aGGGGGUCGC-GCUGGCg--GCaaaC-GUU- -5'
8036 3' -60.3 NC_001973.1 + 36693 0.66 0.71009
Target:  5'- -gCCUC-GCGCGGCCGUCGUccGCu- -3'
miRNA:   3'- agGGGGuCGCGCUGGCGGCAaaCGuu -5'
8036 3' -60.3 NC_001973.1 + 3409 0.66 0.690419
Target:  5'- gCCCaCCAGCGCG-CCGUUucugUGCAc -3'
miRNA:   3'- aGGG-GGUCGCGCuGGCGGcaa-ACGUu -5'
8036 3' -60.3 NC_001973.1 + 6960 0.66 0.690419
Target:  5'- gCCUCCGGCuGCucgcccgaacagGGCCGCCGcg-GCAAa -3'
miRNA:   3'- aGGGGGUCG-CG------------CUGGCGGCaaaCGUU- -5'
8036 3' -60.3 NC_001973.1 + 90087 0.66 0.678522
Target:  5'- gUCCCUCGGCcgGCGACuUGCCGgcgccgaaaagcUUGCGAu -3'
miRNA:   3'- -AGGGGGUCG--CGCUG-GCGGCa-----------AACGUU- -5'
8036 3' -60.3 NC_001973.1 + 3709 0.67 0.670561
Target:  5'- -gCgCCGGuCGCGACCGCgCGgcacgUGCAGg -3'
miRNA:   3'- agGgGGUC-GCGCUGGCG-GCaa---ACGUU- -5'
8036 3' -60.3 NC_001973.1 + 4770 0.68 0.610519
Target:  5'- gUCCgCCGGCGgGACCaggaagGCCGUgUUGCc- -3'
miRNA:   3'- -AGGgGGUCGCgCUGG------CGGCA-AACGuu -5'
8036 3' -60.3 NC_001973.1 + 4642 0.68 0.560833
Target:  5'- aCCCUguCGGCgGCGGgCGCCGUcgGCGAg -3'
miRNA:   3'- aGGGG--GUCG-CGCUgGCGGCAaaCGUU- -5'
8036 3' -60.3 NC_001973.1 + 158631 0.69 0.541247
Target:  5'- gCCgCCCGGCGCGcCCGacgacCCGUUcgGCGAg -3'
miRNA:   3'- aGG-GGGUCGCGCuGGC-----GGCAAa-CGUU- -5'
8036 3' -60.3 NC_001973.1 + 123345 0.69 0.541247
Target:  5'- -gCUCCAGCaCgGACgGCCGUUUGCGGg -3'
miRNA:   3'- agGGGGUCGcG-CUGgCGGCAAACGUU- -5'
8036 3' -60.3 NC_001973.1 + 7095 0.7 0.465627
Target:  5'- gUCCggCGcGCGCGACCGCCGUcgUGCu- -3'
miRNA:   3'- -AGGggGU-CGCGCUGGCGGCAa-ACGuu -5'
8036 3' -60.3 NC_001973.1 + 71734 0.7 0.447573
Target:  5'- gCCCCCGGCGCccgcGGCCGCCccg-GCc- -3'
miRNA:   3'- aGGGGGUCGCG----CUGGCGGcaaaCGuu -5'
8036 3' -60.3 NC_001973.1 + 53871 0.71 0.412672
Target:  5'- gCCgCCgAGCGCGGCgGCCGUggccGCAu -3'
miRNA:   3'- aGG-GGgUCGCGCUGgCGGCAaa--CGUu -5'
8036 3' -60.3 NC_001973.1 + 137000 0.72 0.387626
Target:  5'- gCCCCUcgAGCGCGugCGCCGggUcGCc- -3'
miRNA:   3'- aGGGGG--UCGCGCugGCGGCaaA-CGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.