miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8036 5' -53.2 NC_001973.1 + 152338 0.65 0.973174
Target:  5'- gGugCGCgggcggggcgCGAUAGCGCCGCg--CGa -3'
miRNA:   3'- -CugGCGaua-------GUUGUCGCGGCGauaGU- -5'
8036 5' -53.2 NC_001973.1 + 73701 0.66 0.970888
Target:  5'- cGCCGCgcaGUCGACGggcGCGCCGUcGUa- -3'
miRNA:   3'- cUGGCGa--UAGUUGU---CGCGGCGaUAgu -5'
8036 5' -53.2 NC_001973.1 + 24174 0.66 0.970888
Target:  5'- uGCCGCUG-CGGCcGCGgCGC-GUCAg -3'
miRNA:   3'- cUGGCGAUaGUUGuCGCgGCGaUAGU- -5'
8036 5' -53.2 NC_001973.1 + 3064 0.66 0.967839
Target:  5'- cGCUugGCUGUCgGGCAGCGCCugUAUCAu -3'
miRNA:   3'- cUGG--CGAUAG-UUGUCGCGGcgAUAGU- -5'
8036 5' -53.2 NC_001973.1 + 6114 0.66 0.967839
Target:  5'- uGACgGCgcgCGAgGGCGCCGCg---- -3'
miRNA:   3'- -CUGgCGauaGUUgUCGCGGCGauagu -5'
8036 5' -53.2 NC_001973.1 + 28282 0.66 0.967839
Target:  5'- cGCCGCgccucguggCGGCcgAGCGCCGC-GUCGg -3'
miRNA:   3'- cUGGCGaua------GUUG--UCGCGGCGaUAGU- -5'
8036 5' -53.2 NC_001973.1 + 81047 0.66 0.964569
Target:  5'- gGGCCGC-GUCGACgGGCGUgCGCU-UCAg -3'
miRNA:   3'- -CUGGCGaUAGUUG-UCGCG-GCGAuAGU- -5'
8036 5' -53.2 NC_001973.1 + 17546 0.66 0.964569
Target:  5'- cGGCCGCguugaccGUCAACAGCGUgcacaUGgaAUCGg -3'
miRNA:   3'- -CUGGCGa------UAGUUGUCGCG-----GCgaUAGU- -5'
8036 5' -53.2 NC_001973.1 + 63741 0.66 0.96423
Target:  5'- aGGCCGUUcAUCgAGCGGCGCCacuacgaGCggAUCAa -3'
miRNA:   3'- -CUGGCGA-UAG-UUGUCGCGG-------CGa-UAGU- -5'
8036 5' -53.2 NC_001973.1 + 137824 0.66 0.961074
Target:  5'- gGGCagGUcGUCGcGCGGCGCCGCcAUCAg -3'
miRNA:   3'- -CUGg-CGaUAGU-UGUCGCGGCGaUAGU- -5'
8036 5' -53.2 NC_001973.1 + 104228 0.66 0.961074
Target:  5'- cGAUCGCgcUCGGC-GCGCUGCgcguccGUCAg -3'
miRNA:   3'- -CUGGCGauAGUUGuCGCGGCGa-----UAGU- -5'
8036 5' -53.2 NC_001973.1 + 88967 0.66 0.960712
Target:  5'- uGCCGCUcguccagcacgcaGUCGACGGC-CUGC-AUCAg -3'
miRNA:   3'- cUGGCGA-------------UAGUUGUCGcGGCGaUAGU- -5'
8036 5' -53.2 NC_001973.1 + 95443 0.66 0.957346
Target:  5'- cGACCGCga--AACGuacGCGCUGCUGcUCGa -3'
miRNA:   3'- -CUGGCGauagUUGU---CGCGGCGAU-AGU- -5'
8036 5' -53.2 NC_001973.1 + 32849 0.66 0.956182
Target:  5'- cGCUGCUcuugguuuuguuucGUCGACGGgGCaCGCUAcUCAg -3'
miRNA:   3'- cUGGCGA--------------UAGUUGUCgCG-GCGAU-AGU- -5'
8036 5' -53.2 NC_001973.1 + 43744 0.67 0.954997
Target:  5'- cGACCGC-GUCGgugacgaucucccugACGcGCGCCGCgcucgGUCGc -3'
miRNA:   3'- -CUGGCGaUAGU---------------UGU-CGCGGCGa----UAGU- -5'
8036 5' -53.2 NC_001973.1 + 82807 0.67 0.953383
Target:  5'- uGCCGCc--CAACGGCGCCcaGCagAUCAc -3'
miRNA:   3'- cUGGCGauaGUUGUCGCGG--CGa-UAGU- -5'
8036 5' -53.2 NC_001973.1 + 81803 0.67 0.953383
Target:  5'- cGGCCGCggUGUC--CGGCGCCGCcggCGg -3'
miRNA:   3'- -CUGGCG--AUAGuuGUCGCGGCGauaGU- -5'
8036 5' -53.2 NC_001973.1 + 122837 0.67 0.953383
Target:  5'- cGACCGCcGUUGAU-GCGCaCGCUGUg- -3'
miRNA:   3'- -CUGGCGaUAGUUGuCGCG-GCGAUAgu -5'
8036 5' -53.2 NC_001973.1 + 100999 0.67 0.944728
Target:  5'- uGCUGCUcaccaaAUCGGCgcugcccuuGGCGCCGCUcUCGa -3'
miRNA:   3'- cUGGCGA------UAGUUG---------UCGCGGCGAuAGU- -5'
8036 5' -53.2 NC_001973.1 + 16195 0.67 0.940031
Target:  5'- aGGCCGCUAg-AGC-GCGCUGCgcguUCAg -3'
miRNA:   3'- -CUGGCGAUagUUGuCGCGGCGau--AGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.