miRNA display CGI


Results 1 - 20 of 25 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8037 3' -52.1 NC_001973.1 + 28216 0.66 0.990138
Target:  5'- uCGGCCAcCCcg-GAGCGGcGACaCACCu -3'
miRNA:   3'- -GCUGGUaGGuaaCUCGUU-CUG-GUGGc -5'
8037 3' -52.1 NC_001973.1 + 117488 0.66 0.987275
Target:  5'- gGGCCGUaUCAUgauGGCuuuGGCCGCCGg -3'
miRNA:   3'- gCUGGUA-GGUAac-UCGuu-CUGGUGGC- -5'
8037 3' -52.1 NC_001973.1 + 105758 0.66 0.985621
Target:  5'- -cACCAUCCucugGGGCAGcacGACCGCgCGc -3'
miRNA:   3'- gcUGGUAGGuaa-CUCGUU---CUGGUG-GC- -5'
8037 3' -52.1 NC_001973.1 + 38155 0.66 0.981828
Target:  5'- gGGCCcgCCGagaggacGGGCAAGACUugCa -3'
miRNA:   3'- gCUGGuaGGUaa-----CUCGUUCUGGugGc -5'
8037 3' -52.1 NC_001973.1 + 138361 0.66 0.981828
Target:  5'- gCGGCCGagCGUgccgaaGGGCAGGGCCucgcCCGa -3'
miRNA:   3'- -GCUGGUagGUAa-----CUCGUUCUGGu---GGC- -5'
8037 3' -52.1 NC_001973.1 + 153282 0.66 0.981828
Target:  5'- -cACCA-CCGUUacGGGCGAGACCAUg- -3'
miRNA:   3'- gcUGGUaGGUAA--CUCGUUCUGGUGgc -5'
8037 3' -52.1 NC_001973.1 + 145996 0.67 0.979671
Target:  5'- uCGAgCCggCuCGggGAGCGGGuCCGCCGg -3'
miRNA:   3'- -GCU-GGuaG-GUaaCUCGUUCuGGUGGC- -5'
8037 3' -52.1 NC_001973.1 + 31589 0.67 0.979671
Target:  5'- aGGCCA--CGUUGGGCGccuGGcccACCACCGa -3'
miRNA:   3'- gCUGGUagGUAACUCGU---UC---UGGUGGC- -5'
8037 3' -52.1 NC_001973.1 + 66820 0.67 0.977329
Target:  5'- aGuuCGUCU--UGGGCAAGcCCGCCGu -3'
miRNA:   3'- gCugGUAGGuaACUCGUUCuGGUGGC- -5'
8037 3' -52.1 NC_001973.1 + 26989 0.67 0.977329
Target:  5'- aGACUcUCCGUgucGGGCGcGGCCAUCa -3'
miRNA:   3'- gCUGGuAGGUAa--CUCGUuCUGGUGGc -5'
8037 3' -52.1 NC_001973.1 + 59746 0.67 0.972059
Target:  5'- aCGGCCA-CCGggccGAGCuGGACCugCc -3'
miRNA:   3'- -GCUGGUaGGUaa--CUCGuUCUGGugGc -5'
8037 3' -52.1 NC_001973.1 + 17808 0.67 0.972059
Target:  5'- uCGGCCGUagcacUCGUUGAGC--GACgCGCCGu -3'
miRNA:   3'- -GCUGGUA-----GGUAACUCGuuCUG-GUGGC- -5'
8037 3' -52.1 NC_001973.1 + 21464 0.67 0.971199
Target:  5'- -cGCCGUCCGUcaggcucaccucggUGAGCGcgucgcGGcCCGCCGa -3'
miRNA:   3'- gcUGGUAGGUA--------------ACUCGU------UCuGGUGGC- -5'
8037 3' -52.1 NC_001973.1 + 69918 0.67 0.969117
Target:  5'- aCGACCAggccgCCGcggcgcgUGAGCAGGcCCcuGCCGc -3'
miRNA:   3'- -GCUGGUa----GGUa------ACUCGUUCuGG--UGGC- -5'
8037 3' -52.1 NC_001973.1 + 38757 0.68 0.96596
Target:  5'- uCGACCGUCuCAgaGAgGCGAGAgCGCgGg -3'
miRNA:   3'- -GCUGGUAG-GUaaCU-CGUUCUgGUGgC- -5'
8037 3' -52.1 NC_001973.1 + 93758 0.68 0.96596
Target:  5'- gCGACCAg-----GAGCGGGccGCCGCCGu -3'
miRNA:   3'- -GCUGGUagguaaCUCGUUC--UGGUGGC- -5'
8037 3' -52.1 NC_001973.1 + 31406 0.68 0.96596
Target:  5'- uCGugCucgUCGUcguggUGGGCAcGACCACCGg -3'
miRNA:   3'- -GCugGua-GGUA-----ACUCGUuCUGGUGGC- -5'
8037 3' -52.1 NC_001973.1 + 95622 0.68 0.962232
Target:  5'- aCGACUucaagggggcgugGUCCAccaccGAGCuGGGCCACCa -3'
miRNA:   3'- -GCUGG-------------UAGGUaa---CUCGuUCUGGUGGc -5'
8037 3' -52.1 NC_001973.1 + 119301 0.7 0.91572
Target:  5'- uGACCGUCgCGUUcaaGAGCGGGucggcgcCCGCCGc -3'
miRNA:   3'- gCUGGUAG-GUAA---CUCGUUCu------GGUGGC- -5'
8037 3' -52.1 NC_001973.1 + 8692 0.72 0.836373
Target:  5'- aGACCGUCCAUUu-GCAGGGCgGCg- -3'
miRNA:   3'- gCUGGUAGGUAAcuCGUUCUGgUGgc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.