miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8037 5' -62.4 NC_001973.1 + 4373 0.66 0.651148
Target:  5'- cGGCGGuCUGGCgcucCGCGga-GGuCAUCGUg -3'
miRNA:   3'- -CCGCC-GGCCGa---GCGCacgCC-GUAGUA- -5'
8037 5' -62.4 NC_001973.1 + 83193 0.66 0.651148
Target:  5'- aGCGGCUGGUUCGCacgcucGUcGCGGUcucUCAg -3'
miRNA:   3'- cCGCCGGCCGAGCG------CA-CGCCGu--AGUa -5'
8037 5' -62.4 NC_001973.1 + 18541 0.66 0.651148
Target:  5'- gGGCGcGCCGGC-CGCauagGCGccuCAUCAUg -3'
miRNA:   3'- -CCGC-CGGCCGaGCGca--CGCc--GUAGUA- -5'
8037 5' -62.4 NC_001973.1 + 113895 0.66 0.64132
Target:  5'- -uCGaGCCGGCUCGCGagcaCGGCAcgCAa -3'
miRNA:   3'- ccGC-CGGCCGAGCGCac--GCCGUa-GUa -5'
8037 5' -62.4 NC_001973.1 + 16959 0.66 0.631485
Target:  5'- aGCGGCCGuGCccgaguuuuuggUCGUG-GCGGCcgCGc -3'
miRNA:   3'- cCGCCGGC-CG------------AGCGCaCGCCGuaGUa -5'
8037 5' -62.4 NC_001973.1 + 29006 0.66 0.631485
Target:  5'- cGGCGGCUgGGCacagcaCGCGUcGCGGUAcgccUCGg -3'
miRNA:   3'- -CCGCCGG-CCGa-----GCGCA-CGCCGU----AGUa -5'
8037 5' -62.4 NC_001973.1 + 112765 0.66 0.628534
Target:  5'- uGCGGCCGGCUCGUcgacgcucuccaccGUGCccaaGUCGc -3'
miRNA:   3'- cCGCCGGCCGAGCG--------------CACGccg-UAGUa -5'
8037 5' -62.4 NC_001973.1 + 61662 0.66 0.62165
Target:  5'- aGCaGCUGGCagggacagUCGCGgcgcgaaGCGGCGUCGg -3'
miRNA:   3'- cCGcCGGCCG--------AGCGCa------CGCCGUAGUa -5'
8037 5' -62.4 NC_001973.1 + 96051 0.66 0.611823
Target:  5'- gGGCGGUCuGUUCGCGUG-GGagAUCGa -3'
miRNA:   3'- -CCGCCGGcCGAGCGCACgCCg-UAGUa -5'
8037 5' -62.4 NC_001973.1 + 45966 0.66 0.605933
Target:  5'- cGGCGGCCGGCgcgcucgcccugcugUCGCugGUGCcGCGa--- -3'
miRNA:   3'- -CCGCCGGCCG---------------AGCG--CACGcCGUagua -5'
8037 5' -62.4 NC_001973.1 + 121679 0.66 0.605933
Target:  5'- cGGCGcCCGgauaccgguacgcgaGCUCgGCG-GCGGCGUCGUc -3'
miRNA:   3'- -CCGCcGGC---------------CGAG-CGCaCGCCGUAGUA- -5'
8037 5' -62.4 NC_001973.1 + 53858 0.66 0.60201
Target:  5'- cGGCGGCggCGGCgccgccgagCGCG-GCGGCcgUg- -3'
miRNA:   3'- -CCGCCG--GCCGa--------GCGCaCGCCGuaGua -5'
8037 5' -62.4 NC_001973.1 + 5954 0.66 0.60103
Target:  5'- cGCGGCCGGCggaugCGaCGUccugcacuugcacGCGGCgcgGUCGc -3'
miRNA:   3'- cCGCCGGCCGa----GC-GCA-------------CGCCG---UAGUa -5'
8037 5' -62.4 NC_001973.1 + 30389 0.66 0.592218
Target:  5'- uGCgGGCCGGCgcgGCG-GCGGCggCGg -3'
miRNA:   3'- cCG-CCGGCCGag-CGCaCGCCGuaGUa -5'
8037 5' -62.4 NC_001973.1 + 61101 0.67 0.582452
Target:  5'- cGCGGCCgacggagcagcGGCg-GCGgggcGCGGCGUCGc -3'
miRNA:   3'- cCGCCGG-----------CCGagCGCa---CGCCGUAGUa -5'
8037 5' -62.4 NC_001973.1 + 146114 0.67 0.582452
Target:  5'- cGGCGcugaGCCGGCUCGgGaGCgGGCcgggGUCAa -3'
miRNA:   3'- -CCGC----CGGCCGAGCgCaCG-CCG----UAGUa -5'
8037 5' -62.4 NC_001973.1 + 87975 0.67 0.580503
Target:  5'- uGGCGGUCGGCccgucggUCGCGuUGCcguuuuuGGCGUUu- -3'
miRNA:   3'- -CCGCCGGCCG-------AGCGC-ACG-------CCGUAGua -5'
8037 5' -62.4 NC_001973.1 + 106879 0.67 0.563026
Target:  5'- cGCGcGCCGGCcgaaccgUGCGcGCGGCAaUCGa -3'
miRNA:   3'- cCGC-CGGCCGa------GCGCaCGCCGU-AGUa -5'
8037 5' -62.4 NC_001973.1 + 98345 0.67 0.563026
Target:  5'- cGGCGG-CGGCgCGCGUuCGGCcgCu- -3'
miRNA:   3'- -CCGCCgGCCGaGCGCAcGCCGuaGua -5'
8037 5' -62.4 NC_001973.1 + 89612 0.67 0.553377
Target:  5'- cGUGGCCGGg-CaCGUGCGGCuUCGc -3'
miRNA:   3'- cCGCCGGCCgaGcGCACGCCGuAGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.