miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8037 5' -62.4 NC_001973.1 + 131784 0.77 0.149604
Target:  5'- cGGCGGCCGGCUCG-GUGaaggGGcCGUCGa -3'
miRNA:   3'- -CCGCCGGCCGAGCgCACg---CC-GUAGUa -5'
8037 5' -62.4 NC_001973.1 + 8110 0.76 0.165018
Target:  5'- -cCGGCCGGCUCGUGcagauCGGCAUCAa -3'
miRNA:   3'- ccGCCGGCCGAGCGCac---GCCGUAGUa -5'
8037 5' -62.4 NC_001973.1 + 94726 0.76 0.170742
Target:  5'- aGGCGGCCGGCaagcgCGCGUccgugugcgucucgaGCGGCggCAa -3'
miRNA:   3'- -CCGCCGGCCGa----GCGCA---------------CGCCGuaGUa -5'
8037 5' -62.4 NC_001973.1 + 10708 0.73 0.247324
Target:  5'- cGGCGGgCGGCUCGaUGaGCGGCAcCGUc -3'
miRNA:   3'- -CCGCCgGCCGAGC-GCaCGCCGUaGUA- -5'
8037 5' -62.4 NC_001973.1 + 132548 0.73 0.277298
Target:  5'- cGGCGGCgGGCUCGaGcGCGGCGg--- -3'
miRNA:   3'- -CCGCCGgCCGAGCgCaCGCCGUagua -5'
8037 5' -62.4 NC_001973.1 + 152381 0.72 0.28363
Target:  5'- cGGaCGGCCGGCgcgggcgggCGCGggGCGGCGcgCAa -3'
miRNA:   3'- -CC-GCCGGCCGa--------GCGCa-CGCCGUa-GUa -5'
8037 5' -62.4 NC_001973.1 + 14016 0.71 0.324025
Target:  5'- cGGUGGCgGGCg-GCGU-CGGCGUCGc -3'
miRNA:   3'- -CCGCCGgCCGagCGCAcGCCGUAGUa -5'
8037 5' -62.4 NC_001973.1 + 50211 0.71 0.353254
Target:  5'- cGCGucGCCGGgaUUGCGuUGCGGCAUCGa -3'
miRNA:   3'- cCGC--CGGCCg-AGCGC-ACGCCGUAGUa -5'
8037 5' -62.4 NC_001973.1 + 133995 0.7 0.368552
Target:  5'- cGGUGGCCGuGCUCGCGUccaCGGUgcccGUCu- -3'
miRNA:   3'- -CCGCCGGC-CGAGCGCAc--GCCG----UAGua -5'
8037 5' -62.4 NC_001973.1 + 110777 0.7 0.37637
Target:  5'- cGGCGGCCuGCUC-CG-GCGGCA-CGg -3'
miRNA:   3'- -CCGCCGGcCGAGcGCaCGCCGUaGUa -5'
8037 5' -62.4 NC_001973.1 + 28294 0.7 0.37637
Target:  5'- uGGCGGCCGaGCgcCGCGU-CGGCG-CAa -3'
miRNA:   3'- -CCGCCGGC-CGa-GCGCAcGCCGUaGUa -5'
8037 5' -62.4 NC_001973.1 + 133295 0.7 0.400484
Target:  5'- cGCGGCCGGCggcggCGcCGUcgcGCGGCGaaacuUCAa -3'
miRNA:   3'- cCGCCGGCCGa----GC-GCA---CGCCGU-----AGUa -5'
8037 5' -62.4 NC_001973.1 + 152435 0.7 0.400484
Target:  5'- gGGCGGCgcgcaGGCuuaUCGCGcgGCGGCuuAUCGUa -3'
miRNA:   3'- -CCGCCGg----CCG---AGCGCa-CGCCG--UAGUA- -5'
8037 5' -62.4 NC_001973.1 + 86840 0.69 0.434126
Target:  5'- cGGCcggugucgcgaGGCCcaguGCUCGCGcUGCGGCAUgGUc -3'
miRNA:   3'- -CCG-----------CCGGc---CGAGCGC-ACGCCGUAgUA- -5'
8037 5' -62.4 NC_001973.1 + 132280 0.69 0.434126
Target:  5'- gGGCuGGCCGuGa-CGCGUGCGGCcUCu- -3'
miRNA:   3'- -CCG-CCGGC-CgaGCGCACGCCGuAGua -5'
8037 5' -62.4 NC_001973.1 + 145011 0.69 0.45155
Target:  5'- uGGCGGCucCGGCggCGCccgaGUGCGGCG-CGa -3'
miRNA:   3'- -CCGCCG--GCCGa-GCG----CACGCCGUaGUa -5'
8037 5' -62.4 NC_001973.1 + 55433 0.69 0.45155
Target:  5'- cGGCGGCgGGCccgacggCGCG-GCGG-AUCGUc -3'
miRNA:   3'- -CCGCCGgCCGa------GCGCaCGCCgUAGUA- -5'
8037 5' -62.4 NC_001973.1 + 7939 0.69 0.455081
Target:  5'- cGCGGCCGGCguggugcacgcgccCGCGUGCGcGUAcgCGc -3'
miRNA:   3'- cCGCCGGCCGa-------------GCGCACGC-CGUa-GUa -5'
8037 5' -62.4 NC_001973.1 + 35677 0.69 0.46935
Target:  5'- cGCGGCCgacGGCggCGCGgugGCGGCGa--- -3'
miRNA:   3'- cCGCCGG---CCGa-GCGCa--CGCCGUagua -5'
8037 5' -62.4 NC_001973.1 + 74281 0.69 0.46935
Target:  5'- uGUGGCCGGCgccgUGCGUuCGGCAcggaUCGc -3'
miRNA:   3'- cCGCCGGCCGa---GCGCAcGCCGU----AGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.