miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8038 5' -60.1 NC_001973.1 + 12246 0.66 0.799301
Target:  5'- gCCCGAU-GAcaucaugccuaaaCCCagcuCGGCgGACGCGUAGg -3'
miRNA:   3'- -GGGCUAgCU-------------GGG----GCCGgCUGCGCAUU- -5'
8038 5' -60.1 NC_001973.1 + 152362 0.66 0.791517
Target:  5'- gCCGcgCGaaugagcgaGCCggaCGGCCGGCGCGg-- -3'
miRNA:   3'- gGGCuaGC---------UGGg--GCCGGCUGCGCauu -5'
8038 5' -60.1 NC_001973.1 + 126034 0.66 0.791517
Target:  5'- aCUGAgguugaauUUGAgCUCuGCCGACGCGUAAg -3'
miRNA:   3'- gGGCU--------AGCUgGGGcCGGCUGCGCAUU- -5'
8038 5' -60.1 NC_001973.1 + 53845 0.66 0.791517
Target:  5'- aCCGAgcUCG-CCCCGGCggcggCGGCGCc--- -3'
miRNA:   3'- gGGCU--AGCuGGGGCCG-----GCUGCGcauu -5'
8038 5' -60.1 NC_001973.1 + 6207 0.66 0.791517
Target:  5'- aCCGG-CGGCgCgGuGCCGGCGCGg-- -3'
miRNA:   3'- gGGCUaGCUGgGgC-CGGCUGCGCauu -5'
8038 5' -60.1 NC_001973.1 + 23002 0.66 0.791517
Target:  5'- gCCGAcgugcaaaaGAUCuuGGCCGACGUGg-- -3'
miRNA:   3'- gGGCUag-------CUGGggCCGGCUGCGCauu -5'
8038 5' -60.1 NC_001973.1 + 121841 0.66 0.782742
Target:  5'- gCCCGAacCGGuuUCGGCCGcCGCGa-- -3'
miRNA:   3'- -GGGCUa-GCUggGGCCGGCuGCGCauu -5'
8038 5' -60.1 NC_001973.1 + 134786 0.66 0.782742
Target:  5'- uUCCGGUCGA-UgCGGCCGuCgGCGUGGu -3'
miRNA:   3'- -GGGCUAGCUgGgGCCGGCuG-CGCAUU- -5'
8038 5' -60.1 NC_001973.1 + 121302 0.66 0.773843
Target:  5'- gCCCGcggCGcGCgCCGGCgGACGCGc-- -3'
miRNA:   3'- -GGGCua-GC-UGgGGCCGgCUGCGCauu -5'
8038 5' -60.1 NC_001973.1 + 29959 0.66 0.773843
Target:  5'- gCCCGuacagaGACgCCGGCUcgguggugGGCGCGUAu -3'
miRNA:   3'- -GGGCuag---CUGgGGCCGG--------CUGCGCAUu -5'
8038 5' -60.1 NC_001973.1 + 35258 0.66 0.773843
Target:  5'- -aCGAUCGACaCCUGGUCG-CGCu--- -3'
miRNA:   3'- ggGCUAGCUG-GGGCCGGCuGCGcauu -5'
8038 5' -60.1 NC_001973.1 + 2609 0.66 0.768448
Target:  5'- gCCCGAagaaaacuaagcgcCGGCCgCGGCCGAU-CGUGAg -3'
miRNA:   3'- -GGGCUa-------------GCUGGgGCCGGCUGcGCAUU- -5'
8038 5' -60.1 NC_001973.1 + 59295 0.66 0.764829
Target:  5'- aCCGGUCGGgC-CGGCCcGCGCGc-- -3'
miRNA:   3'- gGGCUAGCUgGgGCCGGcUGCGCauu -5'
8038 5' -60.1 NC_001973.1 + 20952 0.66 0.755706
Target:  5'- gCgCGGUaaacUGAgCUCGGCgGACGCGUAGg -3'
miRNA:   3'- -GgGCUA----GCUgGGGCCGgCUGCGCAUU- -5'
8038 5' -60.1 NC_001973.1 + 150284 0.66 0.755706
Target:  5'- cUCUuGUCGGCCCgGGCCGcCGCu--- -3'
miRNA:   3'- -GGGcUAGCUGGGgCCGGCuGCGcauu -5'
8038 5' -60.1 NC_001973.1 + 7051 0.66 0.752949
Target:  5'- gUCGGUCGugaacgagcugcgcGCCCUGGUCGAgCGCGa-- -3'
miRNA:   3'- gGGCUAGC--------------UGGGGCCGGCU-GCGCauu -5'
8038 5' -60.1 NC_001973.1 + 121361 0.67 0.737168
Target:  5'- gCgCGAccUCGACCaucugGGCCGACGCGc-- -3'
miRNA:   3'- -GgGCU--AGCUGGgg---CCGGCUGCGCauu -5'
8038 5' -60.1 NC_001973.1 + 111945 0.67 0.737168
Target:  5'- -gCGAcuucucCGACCCggCGGCCGAgCGCGUGc -3'
miRNA:   3'- ggGCUa-----GCUGGG--GCCGGCU-GCGCAUu -5'
8038 5' -60.1 NC_001973.1 + 126069 0.67 0.736232
Target:  5'- aCCGcaacGUCGAUuauuaaguugagCCCGagagcguGCCGACGCGUGAg -3'
miRNA:   3'- gGGC----UAGCUG------------GGGC-------CGGCUGCGCAUU- -5'
8038 5' -60.1 NC_001973.1 + 143842 0.67 0.718295
Target:  5'- gUUGAUCGAa-UUGGCCGACGCGg-- -3'
miRNA:   3'- gGGCUAGCUggGGCCGGCUGCGCauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.