miRNA display CGI


Results 21 - 26 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8039 3' -53.6 NC_001973.1 + 2673 0.67 0.960199
Target:  5'- cGCccGAGCUCGAg----CUCGGCCGAc -3'
miRNA:   3'- -CGaaCUUGAGCUaacugGGGCCGGCU- -5'
8039 3' -53.6 NC_001973.1 + 58023 0.67 0.956499
Target:  5'- -aUUGAaccGCUCGAUcucgGGCUCCGGCgGc -3'
miRNA:   3'- cgAACU---UGAGCUAa---CUGGGGCCGgCu -5'
8039 3' -53.6 NC_001973.1 + 133262 0.67 0.952571
Target:  5'- gGCguccAGCUCGGccucGGCCgCGGCCGAg -3'
miRNA:   3'- -CGaac-UUGAGCUaa--CUGGgGCCGGCU- -5'
8039 3' -53.6 NC_001973.1 + 67784 0.67 0.947983
Target:  5'- gGCUguUGAACUUGAcggagaaUUGGCCggUGGCCGGg -3'
miRNA:   3'- -CGA--ACUUGAGCU-------AACUGGg-GCCGGCU- -5'
8039 3' -53.6 NC_001973.1 + 75008 0.67 0.944018
Target:  5'- cGCUucaUGuACUCGAgcgUGACCUucacgcggCGGUCGAa -3'
miRNA:   3'- -CGA---ACuUGAGCUa--ACUGGG--------GCCGGCU- -5'
8039 3' -53.6 NC_001973.1 + 41063 0.92 0.067554
Target:  5'- gGCUUGAACcCGAUcGACCCCGGCCGGc -3'
miRNA:   3'- -CGAACUUGaGCUAaCUGGGGCCGGCU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.