miRNA display CGI


Results 21 - 40 of 141 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8039 5' -60.8 NC_001973.1 + 155410 0.67 0.670312
Target:  5'- -gCCUGCucucgaGCCCGuuGAGCccgcucUCGGGCc -3'
miRNA:   3'- uaGGAUGcg----CGGGCggCUCG------AGCUCG- -5'
8039 5' -60.8 NC_001973.1 + 9843 0.67 0.670312
Target:  5'- uUCCUcGCGCGCCCagaagcguuuGUauaaGAGCUCGuucAGCc -3'
miRNA:   3'- uAGGA-UGCGCGGG----------CGg---CUCGAGC---UCG- -5'
8039 5' -60.8 NC_001973.1 + 65559 0.67 0.670312
Target:  5'- uUUCUcgucGCGCGCgCUGCgCGAGCUCGucuGGUc -3'
miRNA:   3'- uAGGA----UGCGCG-GGCG-GCUCGAGC---UCG- -5'
8039 5' -60.8 NC_001973.1 + 69641 0.67 0.670312
Target:  5'- aGUCggGCGCGCCCuCCGuuuuGCUcCGcAGCa -3'
miRNA:   3'- -UAGgaUGCGCGGGcGGCu---CGA-GC-UCG- -5'
8039 5' -60.8 NC_001973.1 + 124086 0.67 0.670312
Target:  5'- uUUCgacGCGCGCCgCGgCGAGUauuUCGAGUu -3'
miRNA:   3'- uAGGa--UGCGCGG-GCgGCUCG---AGCUCG- -5'
8039 5' -60.8 NC_001973.1 + 64590 0.67 0.667354
Target:  5'- -cCCUuuuuuCGaCGCCCGCCGgcccggcgaaagucGGCgcCGAGCa -3'
miRNA:   3'- uaGGAu----GC-GCGGGCGGC--------------UCGa-GCUCG- -5'
8039 5' -60.8 NC_001973.1 + 22959 0.67 0.664394
Target:  5'- aAUCCUcgaguacgcgcggcgGCGCGCCgaCGCCGAcGC-CGAcGCc -3'
miRNA:   3'- -UAGGA---------------UGCGCGG--GCGGCU-CGaGCU-CG- -5'
8039 5' -60.8 NC_001973.1 + 58451 0.67 0.661432
Target:  5'- -cCCUGCGUGCCCgaaauaGCCGcccgcugccaaacguGCUCG-GCg -3'
miRNA:   3'- uaGGAUGCGCGGG------CGGCu--------------CGAGCuCG- -5'
8039 5' -60.8 NC_001973.1 + 57642 0.67 0.660444
Target:  5'- cGUCC-ACGUGCCCGCUuucGUaCGGGCc -3'
miRNA:   3'- -UAGGaUGCGCGGGCGGcu-CGaGCUCG- -5'
8039 5' -60.8 NC_001973.1 + 96502 0.67 0.650554
Target:  5'- -aCUUGCGCuGCCgcaucgugCGCUucGCUCGAGCg -3'
miRNA:   3'- uaGGAUGCG-CGG--------GCGGcuCGAGCUCG- -5'
8039 5' -60.8 NC_001973.1 + 106413 0.67 0.650554
Target:  5'- uUCgUGCgGCGCgaCGCCGAGCgCGGcGCa -3'
miRNA:   3'- uAGgAUG-CGCGg-GCGGCUCGaGCU-CG- -5'
8039 5' -60.8 NC_001973.1 + 38146 0.67 0.650554
Target:  5'- --gCUugGaugggGCCCGCCGAGaggaCGGGCa -3'
miRNA:   3'- uagGAugCg----CGGGCGGCUCga--GCUCG- -5'
8039 5' -60.8 NC_001973.1 + 90550 0.67 0.650554
Target:  5'- cAUCaaa-GCGUaaaCGCCcGGCUCGAGCa -3'
miRNA:   3'- -UAGgaugCGCGg--GCGGcUCGAGCUCG- -5'
8039 5' -60.8 NC_001973.1 + 132453 0.67 0.640651
Target:  5'- -gCCggcgggGCGCgGCCuCGUCGGGCUCGccGCg -3'
miRNA:   3'- uaGGa-----UGCG-CGG-GCGGCUCGAGCu-CG- -5'
8039 5' -60.8 NC_001973.1 + 123512 0.67 0.640651
Target:  5'- -aCCacgGCGCGCUCGCCG-GCgcagUGcAGCg -3'
miRNA:   3'- uaGGa--UGCGCGGGCGGCuCGa---GC-UCG- -5'
8039 5' -60.8 NC_001973.1 + 36693 0.67 0.640651
Target:  5'- -gCCUcGCGCGgCCGUCGuccGCUucgCGAGCa -3'
miRNA:   3'- uaGGA-UGCGCgGGCGGCu--CGA---GCUCG- -5'
8039 5' -60.8 NC_001973.1 + 107769 0.67 0.634705
Target:  5'- -gCCUGuCGaCGCUuuguCGCCGAugaagccucuuaucuGCUCGAGCa -3'
miRNA:   3'- uaGGAU-GC-GCGG----GCGGCU---------------CGAGCUCG- -5'
8039 5' -60.8 NC_001973.1 + 97767 0.67 0.630741
Target:  5'- cGUCCUcCGCGCacuugauuugUCGCaCGGcCUCGAGCg -3'
miRNA:   3'- -UAGGAuGCGCG----------GGCG-GCUcGAGCUCG- -5'
8039 5' -60.8 NC_001973.1 + 158635 0.67 0.626777
Target:  5'- -cCCgGCGCGCCCGacgacccguucggCGAGaUCGGGCa -3'
miRNA:   3'- uaGGaUGCGCGGGCg------------GCUCgAGCUCG- -5'
8039 5' -60.8 NC_001973.1 + 45158 0.67 0.620832
Target:  5'- cGUCC-ACGgGCgCGCCGAGCagccggUCGAacaGCa -3'
miRNA:   3'- -UAGGaUGCgCGgGCGGCUCG------AGCU---CG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.