miRNA display CGI


Results 1 - 20 of 67 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8040 3' -55.8 NC_001973.1 + 129000 0.66 0.911629
Target:  5'- aGGAUUUUACGCGUCgGCCaGGgUCGa -3'
miRNA:   3'- -UUUAGGAUGCGCAGgCGGcUCgAGUc -5'
8040 3' -55.8 NC_001973.1 + 41421 0.66 0.905511
Target:  5'- ---gCCUcCGCGUCgGCCGAcagGCUCc- -3'
miRNA:   3'- uuuaGGAuGCGCAGgCGGCU---CGAGuc -5'
8040 3' -55.8 NC_001973.1 + 72305 0.66 0.905511
Target:  5'- aAGAUUUUACGCGcCCGCUagggucaacaGAGUUCAa -3'
miRNA:   3'- -UUUAGGAUGCGCaGGCGG----------CUCGAGUc -5'
8040 3' -55.8 NC_001973.1 + 72383 0.66 0.905511
Target:  5'- aAGAUUUUACGCGcCCGCUagggucaacaGAGUUCAa -3'
miRNA:   3'- -UUUAGGAUGCGCaGGCGG----------CUCGAGUc -5'
8040 3' -55.8 NC_001973.1 + 104244 0.66 0.905511
Target:  5'- ----gCUGCGCGUCCGUCagcuGUUCGGc -3'
miRNA:   3'- uuuagGAUGCGCAGGCGGcu--CGAGUC- -5'
8040 3' -55.8 NC_001973.1 + 146012 0.66 0.905511
Target:  5'- ------aGCGgGUCCGCCG-GCUCGa -3'
miRNA:   3'- uuuaggaUGCgCAGGCGGCuCGAGUc -5'
8040 3' -55.8 NC_001973.1 + 71755 0.66 0.899155
Target:  5'- ---cCCggcCGCGccgggccccgCCGCCGAGCUCGa -3'
miRNA:   3'- uuuaGGau-GCGCa---------GGCGGCUCGAGUc -5'
8040 3' -55.8 NC_001973.1 + 150884 0.66 0.899155
Target:  5'- ---gCCgggGCGCGUUC-CaCGAGCUCGGc -3'
miRNA:   3'- uuuaGGa--UGCGCAGGcG-GCUCGAGUC- -5'
8040 3' -55.8 NC_001973.1 + 160640 0.66 0.892565
Target:  5'- aAGAUUUUACGCGUCgGCUagggucaacaGAGUUCAa -3'
miRNA:   3'- -UUUAGGAUGCGCAGgCGG----------CUCGAGUc -5'
8040 3' -55.8 NC_001973.1 + 58963 0.66 0.891219
Target:  5'- --uUCCUGCGCGUguacuuggacggCGCCGAGCa--- -3'
miRNA:   3'- uuuAGGAUGCGCAg-----------GCGGCUCGaguc -5'
8040 3' -55.8 NC_001973.1 + 151422 0.67 0.885744
Target:  5'- aGGGUCCUACuCGUCCGCCGccaaggggaaaGGUuaAGg -3'
miRNA:   3'- -UUUAGGAUGcGCAGGCGGC-----------UCGagUC- -5'
8040 3' -55.8 NC_001973.1 + 127290 0.67 0.885744
Target:  5'- ---aCUgAUGCGUCgGCCGcGCUCGGc -3'
miRNA:   3'- uuuaGGaUGCGCAGgCGGCuCGAGUC- -5'
8040 3' -55.8 NC_001973.1 + 4851 0.67 0.878696
Target:  5'- aAAGUCggcggGCGCGacguuUCCGCCGuGCUCGu -3'
miRNA:   3'- -UUUAGga---UGCGC-----AGGCGGCuCGAGUc -5'
8040 3' -55.8 NC_001973.1 + 12366 0.67 0.878696
Target:  5'- aGGAUUUUACGCGUCgGCaagggucaauCGAGUUCAa -3'
miRNA:   3'- -UUUAGGAUGCGCAGgCG----------GCUCGAGUc -5'
8040 3' -55.8 NC_001973.1 + 16379 0.67 0.878696
Target:  5'- aGGAUUUUACGCGUCgGCuagggucgauCGAGUUCAa -3'
miRNA:   3'- -UUUAGGAUGCGCAGgCG----------GCUCGAGUc -5'
8040 3' -55.8 NC_001973.1 + 20981 0.67 0.878696
Target:  5'- aGGAUUUUACGCGUCgGCuagggucaauCGAGUUCAa -3'
miRNA:   3'- -UUUAGGAUGCGCAGgCG----------GCUCGAGUc -5'
8040 3' -55.8 NC_001973.1 + 130892 0.67 0.878696
Target:  5'- aGGAUUUUACGCGUCgGCuagggucgauCGAGUUCAa -3'
miRNA:   3'- -UUUAGGAUGCGCAGgCG----------GCUCGAGUc -5'
8040 3' -55.8 NC_001973.1 + 160561 0.67 0.871425
Target:  5'- aAGAUUUUACGCGUCgGCuagggucgauCGAGUUCAa -3'
miRNA:   3'- -UUUAGGAUGCGCAGgCG----------GCUCGAGUc -5'
8040 3' -55.8 NC_001973.1 + 72045 0.67 0.871425
Target:  5'- aAGAUUUUACGCGUCgGCgagggucaauCGAGUUCAa -3'
miRNA:   3'- -UUUAGGAUGCGCAGgCG----------GCUCGAGUc -5'
8040 3' -55.8 NC_001973.1 + 16535 0.67 0.871425
Target:  5'- aAGAUUUUACGCGUCgGCuagggucgauCGAGUUCAa -3'
miRNA:   3'- -UUUAGGAUGCGCAGgCG----------GCUCGAGUc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.