miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8040 3' -55.8 NC_001973.1 + 2701 0.8 0.245228
Target:  5'- aAAAUCUUACGCGUCgGCCGGGgUCGa -3'
miRNA:   3'- -UUUAGGAUGCGCAGgCGGCUCgAGUc -5'
8040 3' -55.8 NC_001973.1 + 2819 0.75 0.450568
Target:  5'- aGGAUUUUACGCGUCgGCCGGGgUCGa -3'
miRNA:   3'- -UUUAGGAUGCGCAGgCGGCUCgAGUc -5'
8040 3' -55.8 NC_001973.1 + 4851 0.67 0.878696
Target:  5'- aAAGUCggcggGCGCGacguuUCCGCCGuGCUCGu -3'
miRNA:   3'- -UUUAGga---UGCGC-----AGGCGGCuCGAGUc -5'
8040 3' -55.8 NC_001973.1 + 5428 0.73 0.557233
Target:  5'- ---aCUUGauCGCGUCCaaggaGCCGAGCUCGGg -3'
miRNA:   3'- uuuaGGAU--GCGCAGG-----CGGCUCGAGUC- -5'
8040 3' -55.8 NC_001973.1 + 7092 0.72 0.608219
Target:  5'- uGAGUCCggcgcGCGCGaCCGCCGucguGCUCGa -3'
miRNA:   3'- -UUUAGGa----UGCGCaGGCGGCu---CGAGUc -5'
8040 3' -55.8 NC_001973.1 + 9081 0.7 0.720508
Target:  5'- ---gCCUGuCGCG-CCGCgUGAGCUCGGc -3'
miRNA:   3'- uuuaGGAU-GCGCaGGCG-GCUCGAGUC- -5'
8040 3' -55.8 NC_001973.1 + 12131 0.79 0.257352
Target:  5'- aGGAUUUUACGCGUCUGCCGGGgUCAa -3'
miRNA:   3'- -UUUAGGAUGCGCAGGCGGCUCgAGUc -5'
8040 3' -55.8 NC_001973.1 + 12366 0.67 0.878696
Target:  5'- aGGAUUUUACGCGUCgGCaagggucaauCGAGUUCAa -3'
miRNA:   3'- -UUUAGGAUGCGCAGgCG----------GCUCGAGUc -5'
8040 3' -55.8 NC_001973.1 + 12444 0.75 0.450568
Target:  5'- aGGAUUUUACGCGUCgGCCGGGgUCGa -3'
miRNA:   3'- -UUUAGGAUGCGCAGgCGGCUCgAGUc -5'
8040 3' -55.8 NC_001973.1 + 12506 0.71 0.669895
Target:  5'- gGAggUUUACGCGUCgGCCG-GCUCAa -3'
miRNA:   3'- -UUuaGGAUGCGCAGgCGGCuCGAGUc -5'
8040 3' -55.8 NC_001973.1 + 16379 0.67 0.878696
Target:  5'- aGGAUUUUACGCGUCgGCuagggucgauCGAGUUCAa -3'
miRNA:   3'- -UUUAGGAUGCGCAGgCG----------GCUCGAGUc -5'
8040 3' -55.8 NC_001973.1 + 16535 0.67 0.871425
Target:  5'- aAGAUUUUACGCGUCgGCuagggucgauCGAGUUCAa -3'
miRNA:   3'- -UUUAGGAUGCGCAGgCG----------GCUCGAGUc -5'
8040 3' -55.8 NC_001973.1 + 19707 0.86 0.10027
Target:  5'- aAAAUCCUACGCGUCgGCCGgAGCUCuAGa -3'
miRNA:   3'- -UUUAGGAUGCGCAGgCGGC-UCGAG-UC- -5'
8040 3' -55.8 NC_001973.1 + 20981 0.67 0.878696
Target:  5'- aGGAUUUUACGCGUCgGCuagggucaauCGAGUUCAa -3'
miRNA:   3'- -UUUAGGAUGCGCAGgCG----------GCUCGAGUc -5'
8040 3' -55.8 NC_001973.1 + 21080 0.81 0.206495
Target:  5'- aGGAUCUUACGCGUCgGCCGGGgUCAa -3'
miRNA:   3'- -UUUAGGAUGCGCAGgCGGCUCgAGUc -5'
8040 3' -55.8 NC_001973.1 + 21178 0.75 0.450568
Target:  5'- aGGAUUUUACGCGUCgGCCGGGgUCGa -3'
miRNA:   3'- -UUUAGGAUGCGCAGgCGGCUCgAGUc -5'
8040 3' -55.8 NC_001973.1 + 21267 0.71 0.680116
Target:  5'- cAAAUCgaGCcgcgGCGUCCGCCGGgccgucGCUCAGu -3'
miRNA:   3'- -UUUAGgaUG----CGCAGGCGGCU------CGAGUC- -5'
8040 3' -55.8 NC_001973.1 + 23708 0.7 0.720508
Target:  5'- ----gCUGCGCGccaagCCGCUGGGCUCGc -3'
miRNA:   3'- uuuagGAUGCGCa----GGCGGCUCGAGUc -5'
8040 3' -55.8 NC_001973.1 + 31981 0.73 0.537159
Target:  5'- ----gCUGCGCGccgaucUCCGCCGcGCUCAGg -3'
miRNA:   3'- uuuagGAUGCGC------AGGCGGCuCGAGUC- -5'
8040 3' -55.8 NC_001973.1 + 40859 1.01 0.009479
Target:  5'- aAAAUCCUACGCGUCCGCCGAGCUCGa -3'
miRNA:   3'- -UUUAGGAUGCGCAGGCGGCUCGAGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.