miRNA display CGI


Results 1 - 20 of 225 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8040 5' -55.5 NC_001973.1 + 112677 0.66 0.945475
Target:  5'- aGCUGGCcgUUGGCGccgucguaaaagucuAGCGUGAUCGGCg -3'
miRNA:   3'- gCGGCCG--AGCUGUc--------------UUGCGUUAGCCG- -5'
8040 5' -55.5 NC_001973.1 + 81779 0.66 0.945037
Target:  5'- uGUCGcGCUCGGCGcGAAagugcacggcCGCGGUgucCGGCg -3'
miRNA:   3'- gCGGC-CGAGCUGU-CUU----------GCGUUA---GCCG- -5'
8040 5' -55.5 NC_001973.1 + 138627 0.66 0.945037
Target:  5'- uGCaCGGCUgCGcCA--GCGCGggCGGCa -3'
miRNA:   3'- gCG-GCCGA-GCuGUcuUGCGUuaGCCG- -5'
8040 5' -55.5 NC_001973.1 + 42868 0.66 0.945037
Target:  5'- uGUCGaGCgagCGGCGGcGCGUGAUCuGCa -3'
miRNA:   3'- gCGGC-CGa--GCUGUCuUGCGUUAGcCG- -5'
8040 5' -55.5 NC_001973.1 + 107321 0.66 0.945037
Target:  5'- uGCUGGCgcgccuggaaGGCGGAGCGCGcacGUccacgcccccCGGCg -3'
miRNA:   3'- gCGGCCGag--------CUGUCUUGCGU---UA----------GCCG- -5'
8040 5' -55.5 NC_001973.1 + 114843 0.66 0.944596
Target:  5'- cCGCCGaGCUCGAguuuGgGCAugaucucAUCGGCu -3'
miRNA:   3'- -GCGGC-CGAGCUgucuUgCGU-------UAGCCG- -5'
8040 5' -55.5 NC_001973.1 + 72206 0.66 0.944153
Target:  5'- aGuuGaGCUCGGCGGAcGCGUAAgauuuuacgugcCGGCc -3'
miRNA:   3'- gCggC-CGAGCUGUCU-UGCGUUa-----------GCCG- -5'
8040 5' -55.5 NC_001973.1 + 145011 0.66 0.940525
Target:  5'- uGgCGGCUcCGGCGGcGCcCGAgugCGGCg -3'
miRNA:   3'- gCgGCCGA-GCUGUCuUGcGUUa--GCCG- -5'
8040 5' -55.5 NC_001973.1 + 32302 0.66 0.940525
Target:  5'- aCGCCaGCUCGucguucagauACAGGGCGUccgCGGg -3'
miRNA:   3'- -GCGGcCGAGC----------UGUCUUGCGuuaGCCg -5'
8040 5' -55.5 NC_001973.1 + 47803 0.66 0.940525
Target:  5'- gCGCCGGC-CGACGcguGCGCcaAAUCGcccGCc -3'
miRNA:   3'- -GCGGCCGaGCUGUcu-UGCG--UUAGC---CG- -5'
8040 5' -55.5 NC_001973.1 + 96758 0.66 0.940525
Target:  5'- gCGCCGGCgagUCgGGCGGcGugGCGGccaacgCGGCc -3'
miRNA:   3'- -GCGGCCG---AG-CUGUC-UugCGUUa-----GCCG- -5'
8040 5' -55.5 NC_001973.1 + 35139 0.66 0.940525
Target:  5'- cCGCCGGCgacaGGCcccgcuuGAugGCGAcgcUGGCg -3'
miRNA:   3'- -GCGGCCGag--CUGu------CUugCGUUa--GCCG- -5'
8040 5' -55.5 NC_001973.1 + 127347 0.66 0.939595
Target:  5'- aCGCCuaaacugaGCUCGGCGGAcGCGUAAgauuuuacgugcCGGCa -3'
miRNA:   3'- -GCGGc-------CGAGCUGUCU-UGCGUUa-----------GCCG- -5'
8040 5' -55.5 NC_001973.1 + 124212 0.66 0.935782
Target:  5'- gCGCCGGCUCGugAc--CGacuaCGGCc -3'
miRNA:   3'- -GCGGCCGAGCugUcuuGCguuaGCCG- -5'
8040 5' -55.5 NC_001973.1 + 134101 0.66 0.935782
Target:  5'- gGCCaGGUUCGGCGGcACGUAgaaGUCGuCg -3'
miRNA:   3'- gCGG-CCGAGCUGUCuUGCGU---UAGCcG- -5'
8040 5' -55.5 NC_001973.1 + 114331 0.66 0.935782
Target:  5'- uCGuCCGGCUCGcgAGcACGCAcacgAUcCGGCu -3'
miRNA:   3'- -GC-GGCCGAGCugUCuUGCGU----UA-GCCG- -5'
8040 5' -55.5 NC_001973.1 + 26171 0.66 0.935782
Target:  5'- cCGCCGGC---GCGG-GCGCGucgaCGGCg -3'
miRNA:   3'- -GCGGCCGagcUGUCuUGCGUua--GCCG- -5'
8040 5' -55.5 NC_001973.1 + 151927 0.66 0.930805
Target:  5'- aGCCGGC--GGCAGGcgucgACGCAGUCcucccGCa -3'
miRNA:   3'- gCGGCCGagCUGUCU-----UGCGUUAGc----CG- -5'
8040 5' -55.5 NC_001973.1 + 10993 0.66 0.930805
Target:  5'- gCGCUGGCguucUUGGCuauGAugGCGAccUGGCg -3'
miRNA:   3'- -GCGGCCG----AGCUGu--CUugCGUUa-GCCG- -5'
8040 5' -55.5 NC_001973.1 + 7863 0.66 0.930805
Target:  5'- aGCUGGCgCGcCAGGGCGCGuUUuGCa -3'
miRNA:   3'- gCGGCCGaGCuGUCUUGCGUuAGcCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.