miRNA display CGI


Results 21 - 40 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8040 5' -55.5 NC_001973.1 + 114843 0.66 0.944596
Target:  5'- cCGCCGaGCUCGAguuuGgGCAugaucucAUCGGCu -3'
miRNA:   3'- -GCGGC-CGAGCUgucuUgCGU-------UAGCCG- -5'
8040 5' -55.5 NC_001973.1 + 72206 0.66 0.944153
Target:  5'- aGuuGaGCUCGGCGGAcGCGUAAgauuuuacgugcCGGCc -3'
miRNA:   3'- gCggC-CGAGCUGUCU-UGCGUUa-----------GCCG- -5'
8040 5' -55.5 NC_001973.1 + 35139 0.66 0.940525
Target:  5'- cCGCCGGCgacaGGCcccgcuuGAugGCGAcgcUGGCg -3'
miRNA:   3'- -GCGGCCGag--CUGu------CUugCGUUa--GCCG- -5'
8040 5' -55.5 NC_001973.1 + 96758 0.66 0.940525
Target:  5'- gCGCCGGCgagUCgGGCGGcGugGCGGccaacgCGGCc -3'
miRNA:   3'- -GCGGCCG---AG-CUGUC-UugCGUUa-----GCCG- -5'
8040 5' -55.5 NC_001973.1 + 47803 0.66 0.940525
Target:  5'- gCGCCGGC-CGACGcguGCGCcaAAUCGcccGCc -3'
miRNA:   3'- -GCGGCCGaGCUGUcu-UGCG--UUAGC---CG- -5'
8040 5' -55.5 NC_001973.1 + 32302 0.66 0.940525
Target:  5'- aCGCCaGCUCGucguucagauACAGGGCGUccgCGGg -3'
miRNA:   3'- -GCGGcCGAGC----------UGUCUUGCGuuaGCCg -5'
8040 5' -55.5 NC_001973.1 + 145011 0.66 0.940525
Target:  5'- uGgCGGCUcCGGCGGcGCcCGAgugCGGCg -3'
miRNA:   3'- gCgGCCGA-GCUGUCuUGcGUUa--GCCG- -5'
8040 5' -55.5 NC_001973.1 + 8631 0.67 0.914465
Target:  5'- cCGCCgaGGC-CGACgAGAaacgccaacgugACGCuguUCGGCg -3'
miRNA:   3'- -GCGG--CCGaGCUG-UCU------------UGCGuu-AGCCG- -5'
8040 5' -55.5 NC_001973.1 + 139436 0.67 0.914465
Target:  5'- -aCCGGC-CuGCAGGAUGCcgauagacaGAUCGGCc -3'
miRNA:   3'- gcGGCCGaGcUGUCUUGCG---------UUAGCCG- -5'
8040 5' -55.5 NC_001973.1 + 81821 0.67 0.914465
Target:  5'- cCGCCGGCggCGACGaGACGaCGAgcucaGGUc -3'
miRNA:   3'- -GCGGCCGa-GCUGUcUUGC-GUUag---CCG- -5'
8040 5' -55.5 NC_001973.1 + 69406 0.67 0.914465
Target:  5'- gCGCCGugUCGG-AGGACGCAucCGGCg -3'
miRNA:   3'- -GCGGCcgAGCUgUCUUGCGUuaGCCG- -5'
8040 5' -55.5 NC_001973.1 + 31724 0.67 0.914465
Target:  5'- uGCCGuuGCgCGACAGcAGCGCcgGGUgGGCc -3'
miRNA:   3'- gCGGC--CGaGCUGUC-UUGCG--UUAgCCG- -5'
8040 5' -55.5 NC_001973.1 + 25805 0.67 0.914465
Target:  5'- -aCCGGCgcgCGGCAcaccACGCAagcguccaccauGUCGGCg -3'
miRNA:   3'- gcGGCCGa--GCUGUcu--UGCGU------------UAGCCG- -5'
8040 5' -55.5 NC_001973.1 + 68382 0.67 0.916194
Target:  5'- gGCCGGCaagUCGcccagguACAGGuagaucgugcgcucgGCGCGcucGUCGGCc -3'
miRNA:   3'- gCGGCCG---AGC-------UGUCU---------------UGCGU---UAGCCG- -5'
8040 5' -55.5 NC_001973.1 + 75511 0.67 0.919589
Target:  5'- gGCCGuCUCGcACGGAgauucgaACGCGGacagCGGCu -3'
miRNA:   3'- gCGGCcGAGC-UGUCU-------UGCGUUa---GCCG- -5'
8040 5' -55.5 NC_001973.1 + 31928 0.67 0.920146
Target:  5'- uGCCGGUUgGACgcgcGGAAagGCGAUCaGCc -3'
miRNA:   3'- gCGGCCGAgCUG----UCUUg-CGUUAGcCG- -5'
8040 5' -55.5 NC_001973.1 + 106014 0.67 0.920146
Target:  5'- gGCCGGUUCGcauCAGAcACGaauaAAaCGGCc -3'
miRNA:   3'- gCGGCCGAGCu--GUCU-UGCg---UUaGCCG- -5'
8040 5' -55.5 NC_001973.1 + 144733 0.67 0.920146
Target:  5'- gCGCCaGGCggCGGCGGAGgCGgcCGAggaggCGGCg -3'
miRNA:   3'- -GCGG-CCGa-GCUGUCUU-GC--GUUa----GCCG- -5'
8040 5' -55.5 NC_001973.1 + 107115 0.67 0.920146
Target:  5'- cCGCCGGCUgucgCGAUAcGACGCGAgCGa- -3'
miRNA:   3'- -GCGGCCGA----GCUGUcUUGCGUUaGCcg -5'
8040 5' -55.5 NC_001973.1 + 124798 0.67 0.913884
Target:  5'- cCGCCGGCgagggccggggccUCGAUcGGACGguCGAggaguUCGGCa -3'
miRNA:   3'- -GCGGCCG-------------AGCUGuCUUGC--GUU-----AGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.