miRNA display CGI


Results 61 - 80 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8040 5' -55.5 NC_001973.1 + 87097 0.67 0.908551
Target:  5'- uGCCGuGC-CGGCAcGuguGCGCGugcgCGGCg -3'
miRNA:   3'- gCGGC-CGaGCUGU-Cu--UGCGUua--GCCG- -5'
8040 5' -55.5 NC_001973.1 + 159483 0.67 0.908551
Target:  5'- aCGCCGGUccUUGgaACAGAgGCGC-GUCGGg -3'
miRNA:   3'- -GCGGCCG--AGC--UGUCU-UGCGuUAGCCg -5'
8040 5' -55.5 NC_001973.1 + 114689 0.67 0.908551
Target:  5'- cCGCCGaGCUCGAguuuGGGCGUGAugucaUCGGg -3'
miRNA:   3'- -GCGGC-CGAGCUgu--CUUGCGUU-----AGCCg -5'
8040 5' -55.5 NC_001973.1 + 52161 0.67 0.909153
Target:  5'- aGCCGGUgggcgccguacuuggCGAC-GAGCGCGgcgggGUCGcGCg -3'
miRNA:   3'- gCGGCCGa--------------GCUGuCUUGCGU-----UAGC-CG- -5'
8040 5' -55.5 NC_001973.1 + 67625 0.67 0.912715
Target:  5'- uGCCGGCcgCGuCcgAGAgcgugccgaggaacACGCAGUUGGUg -3'
miRNA:   3'- gCGGCCGa-GCuG--UCU--------------UGCGUUAGCCG- -5'
8040 5' -55.5 NC_001973.1 + 124798 0.67 0.913884
Target:  5'- cCGCCGGCgagggccggggccUCGAUcGGACGguCGAggaguUCGGCa -3'
miRNA:   3'- -GCGGCCG-------------AGCUGuCUUGC--GUU-----AGCCG- -5'
8040 5' -55.5 NC_001973.1 + 31724 0.67 0.914465
Target:  5'- uGCCGuuGCgCGACAGcAGCGCcgGGUgGGCc -3'
miRNA:   3'- gCGGC--CGaGCUGUC-UUGCG--UUAgCCG- -5'
8040 5' -55.5 NC_001973.1 + 69406 0.67 0.914465
Target:  5'- gCGCCGugUCGG-AGGACGCAucCGGCg -3'
miRNA:   3'- -GCGGCcgAGCUgUCUUGCGUuaGCCG- -5'
8040 5' -55.5 NC_001973.1 + 55426 0.68 0.874852
Target:  5'- uCGUCGGCggCGGCGGGcccgacgGCGCGG-CGGa -3'
miRNA:   3'- -GCGGCCGa-GCUGUCU-------UGCGUUaGCCg -5'
8040 5' -55.5 NC_001973.1 + 106581 0.68 0.871241
Target:  5'- gCGCCaaGCUCGGCgccgccgucaagcgaAcGAGCGCGAcCGGCg -3'
miRNA:   3'- -GCGGc-CGAGCUG---------------U-CUUGCGUUaGCCG- -5'
8040 5' -55.5 NC_001973.1 + 88677 0.68 0.868314
Target:  5'- cCGUCGGCccucagcaugUCGGC-GAacacGCGCucuuGUCGGCa -3'
miRNA:   3'- -GCGGCCG----------AGCUGuCU----UGCGu---UAGCCG- -5'
8040 5' -55.5 NC_001973.1 + 122969 0.68 0.868314
Target:  5'- aCGCCGGCUCuGuuuuCGcGAACGCcguccaccgCGGCc -3'
miRNA:   3'- -GCGGCCGAG-Cu---GU-CUUGCGuua------GCCG- -5'
8040 5' -55.5 NC_001973.1 + 122724 0.68 0.868314
Target:  5'- cCGUCGGUcgCGACGGAcaGCAGcuugcgCGGCa -3'
miRNA:   3'- -GCGGCCGa-GCUGUCUugCGUUa-----GCCG- -5'
8040 5' -55.5 NC_001973.1 + 4457 0.68 0.875568
Target:  5'- gCGCCGuGC-CGACA-AACGCAAacUCGuGCc -3'
miRNA:   3'- -GCGGC-CGaGCUGUcUUGCGUU--AGC-CG- -5'
8040 5' -55.5 NC_001973.1 + 51887 0.68 0.875568
Target:  5'- uCGCCGGCU-GugAGGAacguCGCGGaggacUCGGUc -3'
miRNA:   3'- -GCGGCCGAgCugUCUU----GCGUU-----AGCCG- -5'
8040 5' -55.5 NC_001973.1 + 45262 0.68 0.882609
Target:  5'- uGCgGGC-CGGCAaaguAGCGCGGauccUCGGCg -3'
miRNA:   3'- gCGgCCGaGCUGUc---UUGCGUU----AGCCG- -5'
8040 5' -55.5 NC_001973.1 + 134846 0.68 0.882609
Target:  5'- aGCUuacucuugGGCU-GGCAGAgcACGCAGccUCGGCc -3'
miRNA:   3'- gCGG--------CCGAgCUGUCU--UGCGUU--AGCCG- -5'
8040 5' -55.5 NC_001973.1 + 56184 0.68 0.882609
Target:  5'- gCGgCGcGCUCGACGuAGuCGCuuucGUCGGCg -3'
miRNA:   3'- -GCgGC-CGAGCUGUcUU-GCGu---UAGCCG- -5'
8040 5' -55.5 NC_001973.1 + 56410 0.68 0.882609
Target:  5'- aGCCGaGCUCGGuaucgggcuCGGGGCuaAAcUCGGCg -3'
miRNA:   3'- gCGGC-CGAGCU---------GUCUUGcgUU-AGCCG- -5'
8040 5' -55.5 NC_001973.1 + 83819 0.68 0.868314
Target:  5'- gGCCGcGCgCGGCGGAGCuCgAAUCGGa -3'
miRNA:   3'- gCGGC-CGaGCUGUCUUGcG-UUAGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.