Results 81 - 100 of 225 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8040 | 5' | -55.5 | NC_001973.1 | + | 83819 | 0.68 | 0.868314 |
Target: 5'- gGCCGcGCgCGGCGGAGCuCgAAUCGGa -3' miRNA: 3'- gCGGC-CGaGCUGUCUUGcG-UUAGCCg -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 122724 | 0.68 | 0.868314 |
Target: 5'- cCGUCGGUcgCGACGGAcaGCAGcuugcgCGGCa -3' miRNA: 3'- -GCGGCCGa-GCUGUCUugCGUUa-----GCCG- -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 74350 | 0.68 | 0.882609 |
Target: 5'- gGCCGGCggCG-CAGcGGCGCAccgccGUCuGGCc -3' miRNA: 3'- gCGGCCGa-GCuGUC-UUGCGU-----UAG-CCG- -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 56410 | 0.68 | 0.882609 |
Target: 5'- aGCCGaGCUCGGuaucgggcuCGGGGCuaAAcUCGGCg -3' miRNA: 3'- gCGGC-CGAGCU---------GUCUUGcgUU-AGCCG- -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 56184 | 0.68 | 0.882609 |
Target: 5'- gCGgCGcGCUCGACGuAGuCGCuuucGUCGGCg -3' miRNA: 3'- -GCgGC-CGAGCUGUcUU-GCGu---UAGCCG- -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 134846 | 0.68 | 0.882609 |
Target: 5'- aGCUuacucuugGGCU-GGCAGAgcACGCAGccUCGGCc -3' miRNA: 3'- gCGG--------CCGAgCUGUCU--UGCGUU--AGCCG- -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 45262 | 0.68 | 0.882609 |
Target: 5'- uGCgGGC-CGGCAaaguAGCGCGGauccUCGGCg -3' miRNA: 3'- gCGgCCGaGCUGUc---UUGCGUU----AGCCG- -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 51887 | 0.68 | 0.875568 |
Target: 5'- uCGCCGGCU-GugAGGAacguCGCGGaggacUCGGUc -3' miRNA: 3'- -GCGGCCGAgCugUCUU----GCGUU-----AGCCG- -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 4457 | 0.68 | 0.875568 |
Target: 5'- gCGCCGuGC-CGACA-AACGCAAacUCGuGCc -3' miRNA: 3'- -GCGGC-CGaGCUGUcUUGCGUU--AGC-CG- -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 55426 | 0.68 | 0.874852 |
Target: 5'- uCGUCGGCggCGGCGGGcccgacgGCGCGG-CGGa -3' miRNA: 3'- -GCGGCCGa-GCUGUCU-------UGCGUUaGCCg -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 106581 | 0.68 | 0.871241 |
Target: 5'- gCGCCaaGCUCGGCgccgccgucaagcgaAcGAGCGCGAcCGGCg -3' miRNA: 3'- -GCGGc-CGAGCUG---------------U-CUUGCGUUaGCCG- -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 88677 | 0.68 | 0.868314 |
Target: 5'- cCGUCGGCccucagcaugUCGGC-GAacacGCGCucuuGUCGGCa -3' miRNA: 3'- -GCGGCCG----------AGCUGuCU----UGCGu---UAGCCG- -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 122969 | 0.68 | 0.868314 |
Target: 5'- aCGCCGGCUCuGuuuuCGcGAACGCcguccaccgCGGCc -3' miRNA: 3'- -GCGGCCGAG-Cu---GU-CUUGCGuua------GCCG- -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 150956 | 0.69 | 0.844527 |
Target: 5'- -cUCGaGCUCGGCGG-ACGCGuaaaauccuacgcGUCGGCc -3' miRNA: 3'- gcGGC-CGAGCUGUCuUGCGU-------------UAGCCG- -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 5957 | 0.69 | 0.845324 |
Target: 5'- gGCCGGCggaugCGACGuccugcacuUGCAcgCGGCg -3' miRNA: 3'- gCGGCCGa----GCUGUcuu------GCGUuaGCCG- -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 83460 | 0.69 | 0.845324 |
Target: 5'- gCGCCGcGCUCGucgaGGAGgaggUGUggUCGGUg -3' miRNA: 3'- -GCGGC-CGAGCug--UCUU----GCGuuAGCCG- -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 106882 | 0.69 | 0.845324 |
Target: 5'- gCGCCGGC-CGAaccguGCGCg--CGGCa -3' miRNA: 3'- -GCGGCCGaGCUgucu-UGCGuuaGCCG- -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 146122 | 0.69 | 0.845324 |
Target: 5'- aGCCGGCUCGggaGCGGGcCGgGGUCaaGCg -3' miRNA: 3'- gCGGCCGAGC---UGUCUuGCgUUAGc-CG- -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 158336 | 0.69 | 0.845324 |
Target: 5'- aGCCGGCUCGuCAacccGCGCccgcgcCGGCu -3' miRNA: 3'- gCGGCCGAGCuGUcu--UGCGuua---GCCG- -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 130696 | 0.69 | 0.844527 |
Target: 5'- -cUCGaGCUCGGCGG-ACGCGuaggauuuuacgcGUCGGCc -3' miRNA: 3'- gcGGC-CGAGCUGUCuUGCGU-------------UAGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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