Results 61 - 80 of 225 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8040 | 5' | -55.5 | NC_001973.1 | + | 16004 | 0.71 | 0.728635 |
Target: 5'- gCGCCGGa-CGACcGAugGCGccagcUCGGCg -3' miRNA: 3'- -GCGGCCgaGCUGuCUugCGUu----AGCCG- -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 104169 | 0.71 | 0.699036 |
Target: 5'- gGCCGGC-CGAa--AACGCAAgCGGCc -3' miRNA: 3'- gCGGCCGaGCUgucUUGCGUUaGCCG- -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 95725 | 0.71 | 0.728635 |
Target: 5'- gCGCCGGCUguUGgcGCAGGGCGCGcccgccgacaagAUCGuGCu -3' miRNA: 3'- -GCGGCCGA--GC--UGUCUUGCGU------------UAGC-CG- -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 28079 | 0.71 | 0.728635 |
Target: 5'- gCGCgGGCaCGACgAGGACGuCAuugCGGCg -3' miRNA: 3'- -GCGgCCGaGCUG-UCUUGC-GUua-GCCG- -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 6220 | 0.71 | 0.708969 |
Target: 5'- uGCCGGCgCGGCgcccugucGGAuuGCGCGAaaacgccuguUCGGCg -3' miRNA: 3'- gCGGCCGaGCUG--------UCU--UGCGUU----------AGCCG- -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 160533 | 0.71 | 0.707979 |
Target: 5'- aCGCCuaaacugaGCUCGGCGG-ACGCGuaagauuuuacgcGUCGGCu -3' miRNA: 3'- -GCGGc-------CGAGCUGUCuUGCGU-------------UAGCCG- -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 23925 | 0.71 | 0.699036 |
Target: 5'- aCG-CGGCUCGACuGcgcCGCGgucGUCGGCa -3' miRNA: 3'- -GCgGCCGAGCUGuCuu-GCGU---UAGCCG- -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 64261 | 0.71 | 0.699036 |
Target: 5'- gCGCCaGUUCGGCGaGGCGCAcUCGGa -3' miRNA: 3'- -GCGGcCGAGCUGUcUUGCGUuAGCCg -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 49787 | 0.71 | 0.69804 |
Target: 5'- uCGCCGGCcagaggCGcuacguGCAGAgccagaaGCGCAAgcUCGGCg -3' miRNA: 3'- -GCGGCCGa-----GC------UGUCU-------UGCGUU--AGCCG- -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 122636 | 0.71 | 0.737382 |
Target: 5'- gCGCCGGCgucggUCGAgAGAgcaccugaacgcgGCGCcGUCGGg -3' miRNA: 3'- -GCGGCCG-----AGCUgUCU-------------UGCGuUAGCCg -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 72120 | 0.7 | 0.765975 |
Target: 5'- -cUCGaGCUCGGCGG-ACGCGuaggaucuuacgcGUCGGCa -3' miRNA: 3'- gcGGC-CGAGCUGUCuUGCGU-------------UAGCCG- -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 139869 | 0.7 | 0.766911 |
Target: 5'- uGCUGGCaccacuugaUCGGCAagcucGAGCGCGugguGUCGGUg -3' miRNA: 3'- gCGGCCG---------AGCUGU-----CUUGCGU----UAGCCG- -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 111745 | 0.7 | 0.766911 |
Target: 5'- cCGUCaGCUCGACGGAcgaccuGCGCGGcgucagaucugCGGCa -3' miRNA: 3'- -GCGGcCGAGCUGUCU------UGCGUUa----------GCCG- -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 129225 | 0.7 | 0.765975 |
Target: 5'- -cUCGaGCUCGGCGG-ACGCGuaagaucuuacgcGUCGGCa -3' miRNA: 3'- gcGGC-CGAGCUGUCuUGCGU-------------UAGCCG- -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 9634 | 0.7 | 0.776209 |
Target: 5'- cCGCUGGCguUCGGCucgAGGGCGCGGUacagcCGGUc -3' miRNA: 3'- -GCGGCCG--AGCUG---UCUUGCGUUA-----GCCG- -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 95796 | 0.7 | 0.766911 |
Target: 5'- gGaCCGGCgUGACGGcuACGCGGaCGGCa -3' miRNA: 3'- gC-GGCCGaGCUGUCu-UGCGUUaGCCG- -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 130951 | 0.7 | 0.765975 |
Target: 5'- -cUCGaGCUCGGCGG-ACGCGuaagaucuuacgcGUCGGCg -3' miRNA: 3'- gcGGC-CGAGCUGUCuUGCGU-------------UAGCCG- -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 68612 | 0.7 | 0.766911 |
Target: 5'- gCGCCgaGGC-CGAcCAGcuGACGCAAUgGGCc -3' miRNA: 3'- -GCGG--CCGaGCU-GUC--UUGCGUUAgCCG- -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 61665 | 0.7 | 0.776209 |
Target: 5'- aGCUGGCaggGACAGucgcGGCGCGAagCGGCg -3' miRNA: 3'- gCGGCCGag-CUGUC----UUGCGUUa-GCCG- -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 57110 | 0.7 | 0.776209 |
Target: 5'- gGCCGGCUCacguaaaaguuGaACAGcuCGCAGUUGGg -3' miRNA: 3'- gCGGCCGAG-----------C-UGUCuuGCGUUAGCCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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