miRNA display CGI


Results 1 - 20 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8040 5' -55.5 NC_001973.1 + 97146 0.81 0.24901
Target:  5'- aCGCCGGCUCGACuGAuCGCcaacgaCGGCa -3'
miRNA:   3'- -GCGGCCGAGCUGuCUuGCGuua---GCCG- -5'
8040 5' -55.5 NC_001973.1 + 69315 0.8 0.293415
Target:  5'- uGCCGGCUCGuGCAGAGCuugcgccagcaaGCGGUcCGGCc -3'
miRNA:   3'- gCGGCCGAGC-UGUCUUG------------CGUUA-GCCG- -5'
8040 5' -55.5 NC_001973.1 + 61098 0.78 0.351444
Target:  5'- cCGCgCGGC-CGACGGAGCaGCGG-CGGCg -3'
miRNA:   3'- -GCG-GCCGaGCUGUCUUG-CGUUaGCCG- -5'
8040 5' -55.5 NC_001973.1 + 90281 0.78 0.367168
Target:  5'- uCGUCGGCUCGGCcGGuguucaagGCGCAcagucgGUCGGCg -3'
miRNA:   3'- -GCGGCCGAGCUGuCU--------UGCGU------UAGCCG- -5'
8040 5' -55.5 NC_001973.1 + 158453 0.78 0.37521
Target:  5'- aGCCGGCUCGucaAGAAagucCGAUCGGCu -3'
miRNA:   3'- gCGGCCGAGCug-UCUUgc--GUUAGCCG- -5'
8040 5' -55.5 NC_001973.1 + 118429 0.78 0.37521
Target:  5'- cCGCCgGGCUCGAC-GAGCGCAAgcgcgacaaaUGGCg -3'
miRNA:   3'- -GCGG-CCGAGCUGuCUUGCGUUa---------GCCG- -5'
8040 5' -55.5 NC_001973.1 + 68496 0.77 0.400038
Target:  5'- uCGCCacCUCGACAGAAUGCGuUCGGUc -3'
miRNA:   3'- -GCGGccGAGCUGUCUUGCGUuAGCCG- -5'
8040 5' -55.5 NC_001973.1 + 53990 0.76 0.425891
Target:  5'- uGCCGGCUgucguUGACGuccgcguagucGAACGCGAUCGGg -3'
miRNA:   3'- gCGGCCGA-----GCUGU-----------CUUGCGUUAGCCg -5'
8040 5' -55.5 NC_001973.1 + 70085 0.76 0.452712
Target:  5'- gGCgGGCUCGAUGuugugcgcGAGCGCGAacgccUCGGCg -3'
miRNA:   3'- gCGgCCGAGCUGU--------CUUGCGUU-----AGCCG- -5'
8040 5' -55.5 NC_001973.1 + 123495 0.76 0.461855
Target:  5'- uCGCCGGCUCGucgcacaccACGGcGCGCucgcCGGCg -3'
miRNA:   3'- -GCGGCCGAGC---------UGUCuUGCGuua-GCCG- -5'
8040 5' -55.5 NC_001973.1 + 38967 0.76 0.46554
Target:  5'- gGCCGGCgagcguuuauaaacCGACGGcgguGCGCAGUCGcGCg -3'
miRNA:   3'- gCGGCCGa-------------GCUGUCu---UGCGUUAGC-CG- -5'
8040 5' -55.5 NC_001973.1 + 135910 0.76 0.471095
Target:  5'- gGCCGGacgaUCGucGCAGAGCGgGcgCGGCg -3'
miRNA:   3'- gCGGCCg---AGC--UGUCUUGCgUuaGCCG- -5'
8040 5' -55.5 NC_001973.1 + 14359 0.75 0.480428
Target:  5'- gGUCGGCguggUCGACGGGGCGCGGcgaGGCc -3'
miRNA:   3'- gCGGCCG----AGCUGUCUUGCGUUag-CCG- -5'
8040 5' -55.5 NC_001973.1 + 30368 0.75 0.480428
Target:  5'- cCGCCGGCgcggCGACucGggUGCGGgcCGGCg -3'
miRNA:   3'- -GCGGCCGa---GCUGu-CuuGCGUUa-GCCG- -5'
8040 5' -55.5 NC_001973.1 + 16512 0.75 0.488903
Target:  5'- uCGCuCGaGCUCGGCGG-ACGCGuaagauuuuacgcGUCGGCu -3'
miRNA:   3'- -GCG-GC-CGAGCUGUCuUGCGU-------------UAGCCG- -5'
8040 5' -55.5 NC_001973.1 + 29971 0.75 0.489849
Target:  5'- aCGCCGGCUCGguGguGGGCGCGuauAUCuGCg -3'
miRNA:   3'- -GCGGCCGAGC--UguCUUGCGU---UAGcCG- -5'
8040 5' -55.5 NC_001973.1 + 8170 0.75 0.499357
Target:  5'- cCGUCGGCgggUCGACGGAcgaGCGCGccgaCGGCa -3'
miRNA:   3'- -GCGGCCG---AGCUGUCU---UGCGUua--GCCG- -5'
8040 5' -55.5 NC_001973.1 + 136587 0.75 0.499357
Target:  5'- gCGCCGGCgCGACGcucagcucgucGGGCGCc-UCGGCg -3'
miRNA:   3'- -GCGGCCGaGCUGU-----------CUUGCGuuAGCCG- -5'
8040 5' -55.5 NC_001973.1 + 38643 0.75 0.499357
Target:  5'- gGCCGuGCUCG-CG--GCGCAGUCGGUc -3'
miRNA:   3'- gCGGC-CGAGCuGUcuUGCGUUAGCCG- -5'
8040 5' -55.5 NC_001973.1 + 20947 0.74 0.524443
Target:  5'- aGCCGGCgcgguaaacugagcUCGGCGG-ACGCGuaggauuuuacgcGUCGGCu -3'
miRNA:   3'- gCGGCCG--------------AGCUGUCuUGCGU-------------UAGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.