miRNA display CGI


Results 41 - 60 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8040 5' -55.5 NC_001973.1 + 53591 0.72 0.642636
Target:  5'- gCGCCGGCgccgaggauuauuuaUCGACuG-GCGUuAUCGGCg -3'
miRNA:   3'- -GCGGCCG---------------AGCUGuCuUGCGuUAGCCG- -5'
8040 5' -55.5 NC_001973.1 + 130539 0.72 0.647703
Target:  5'- -aCCGaGCUCGGCGG-ACGCGuaagauuuuacgcGUCGGCc -3'
miRNA:   3'- gcGGC-CGAGCUGUCuUGCGU-------------UAGCCG- -5'
8040 5' -55.5 NC_001973.1 + 72468 0.72 0.647703
Target:  5'- -aCCGaGCUCGGCGG-ACGCGuaaaaucuuacgcGUCGGCc -3'
miRNA:   3'- gcGGC-CGAGCUGUCuUGCGU-------------UAGCCG- -5'
8040 5' -55.5 NC_001973.1 + 21058 0.72 0.647703
Target:  5'- aGCuCGaGCUCGGCGG-GCGCGuaggaucuuacgcGUCGGCc -3'
miRNA:   3'- gCG-GC-CGAGCUGUCuUGCGU-------------UAGCCG- -5'
8040 5' -55.5 NC_001973.1 + 160795 0.72 0.647703
Target:  5'- aGCuCGaGCUCGGCGG-GCGCGuaggauuuuacgcGUCGGCc -3'
miRNA:   3'- gCG-GC-CGAGCUGUCuUGCGU-------------UAGCCG- -5'
8040 5' -55.5 NC_001973.1 + 28398 0.72 0.648716
Target:  5'- gCGCCGGCgacgcCGuCAguGAGCGCGcUUGGCg -3'
miRNA:   3'- -GCGGCCGa----GCuGU--CUUGCGUuAGCCG- -5'
8040 5' -55.5 NC_001973.1 + 8514 0.72 0.648716
Target:  5'- aGCCGGgaCGAUu--GCGCGAcgcUCGGCu -3'
miRNA:   3'- gCGGCCgaGCUGucuUGCGUU---AGCCG- -5'
8040 5' -55.5 NC_001973.1 + 103909 0.72 0.658839
Target:  5'- cCGCCgcGGCgCGACgaGGAGCGCGucgucgCGGCg -3'
miRNA:   3'- -GCGG--CCGaGCUG--UCUUGCGUua----GCCG- -5'
8040 5' -55.5 NC_001973.1 + 109856 0.72 0.658839
Target:  5'- uCGCCGccGC-CGACgAGGACGCGGcgcgCGGCg -3'
miRNA:   3'- -GCGGC--CGaGCUG-UCUUGCGUUa---GCCG- -5'
8040 5' -55.5 NC_001973.1 + 28281 0.72 0.658839
Target:  5'- uCGCCGcGCcucguggCGGCcGAGCGCcgcGUCGGCg -3'
miRNA:   3'- -GCGGC-CGa------GCUGuCUUGCGu--UAGCCG- -5'
8040 5' -55.5 NC_001973.1 + 86533 0.72 0.658839
Target:  5'- cCGCCGGCgCGccugaagaGCAuGAACGCGGUCaGCc -3'
miRNA:   3'- -GCGGCCGaGC--------UGU-CUUGCGUUAGcCG- -5'
8040 5' -55.5 NC_001973.1 + 10563 0.72 0.667932
Target:  5'- uCGCCGuucugcaGCUCGAuCAcGGCGCGcUCGGCa -3'
miRNA:   3'- -GCGGC-------CGAGCU-GUcUUGCGUuAGCCG- -5'
8040 5' -55.5 NC_001973.1 + 62940 0.72 0.668941
Target:  5'- gGCCGGCgUCGuCAGuagacuuGCGCGAgcccgcCGGCg -3'
miRNA:   3'- gCGGCCG-AGCuGUCu------UGCGUUa-----GCCG- -5'
8040 5' -55.5 NC_001973.1 + 111495 0.72 0.668941
Target:  5'- gCGCCGGCgcgCGACAacuGCGCcg-CGGUc -3'
miRNA:   3'- -GCGGCCGa--GCUGUcu-UGCGuuaGCCG- -5'
8040 5' -55.5 NC_001973.1 + 73665 0.72 0.679013
Target:  5'- gCGCCGGCccucgaacgggUCGaACAGAaggggccccgccGCGCAGUCgacgGGCg -3'
miRNA:   3'- -GCGGCCG-----------AGC-UGUCU------------UGCGUUAG----CCG- -5'
8040 5' -55.5 NC_001973.1 + 77384 0.72 0.688046
Target:  5'- gCGCCGGCgcCGACGuuuugguGAugGCGcuguuGUCGGUg -3'
miRNA:   3'- -GCGGCCGa-GCUGU-------CUugCGU-----UAGCCG- -5'
8040 5' -55.5 NC_001973.1 + 8112 0.72 0.689048
Target:  5'- gGCCGGCUCGuGCAGA------UCGGCa -3'
miRNA:   3'- gCGGCCGAGC-UGUCUugcguuAGCCG- -5'
8040 5' -55.5 NC_001973.1 + 81179 0.72 0.689048
Target:  5'- gCGUCGGgUCGGCGGcggcGACGguGUUGGUc -3'
miRNA:   3'- -GCGGCCgAGCUGUC----UUGCguUAGCCG- -5'
8040 5' -55.5 NC_001973.1 + 49787 0.71 0.69804
Target:  5'- uCGCCGGCcagaggCGcuacguGCAGAgccagaaGCGCAAgcUCGGCg -3'
miRNA:   3'- -GCGGCCGa-----GC------UGUCU-------UGCGUU--AGCCG- -5'
8040 5' -55.5 NC_001973.1 + 104169 0.71 0.699036
Target:  5'- gGCCGGC-CGAa--AACGCAAgCGGCc -3'
miRNA:   3'- gCGGCCGaGCUgucUUGCGUUaGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.