miRNA display CGI


Results 61 - 80 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8040 5' -55.5 NC_001973.1 + 23925 0.71 0.699036
Target:  5'- aCG-CGGCUCGACuGcgcCGCGgucGUCGGCa -3'
miRNA:   3'- -GCgGCCGAGCUGuCuu-GCGU---UAGCCG- -5'
8040 5' -55.5 NC_001973.1 + 104169 0.71 0.699036
Target:  5'- gGCCGGC-CGAa--AACGCAAgCGGCc -3'
miRNA:   3'- gCGGCCGaGCUgucUUGCGUUaGCCG- -5'
8040 5' -55.5 NC_001973.1 + 160533 0.71 0.707979
Target:  5'- aCGCCuaaacugaGCUCGGCGG-ACGCGuaagauuuuacgcGUCGGCu -3'
miRNA:   3'- -GCGGc-------CGAGCUGUCuUGCGU-------------UAGCCG- -5'
8040 5' -55.5 NC_001973.1 + 6220 0.71 0.708969
Target:  5'- uGCCGGCgCGGCgcccugucGGAuuGCGCGAaaacgccuguUCGGCg -3'
miRNA:   3'- gCGGCCGaGCUG--------UCU--UGCGUU----------AGCCG- -5'
8040 5' -55.5 NC_001973.1 + 10609 0.71 0.727659
Target:  5'- aGuuGGCgaggcccUCGcggcACAGGuCGCAAUCGGCg -3'
miRNA:   3'- gCggCCG-------AGC----UGUCUuGCGUUAGCCG- -5'
8040 5' -55.5 NC_001973.1 + 28079 0.71 0.728635
Target:  5'- gCGCgGGCaCGACgAGGACGuCAuugCGGCg -3'
miRNA:   3'- -GCGgCCGaGCUG-UCUUGC-GUua-GCCG- -5'
8040 5' -55.5 NC_001973.1 + 16004 0.71 0.728635
Target:  5'- gCGCCGGa-CGACcGAugGCGccagcUCGGCg -3'
miRNA:   3'- -GCGGCCgaGCUGuCUugCGUu----AGCCG- -5'
8040 5' -55.5 NC_001973.1 + 21727 0.71 0.728635
Target:  5'- cCGCUGGCgUCGcCGGAcaagACGCAuaUGGCg -3'
miRNA:   3'- -GCGGCCG-AGCuGUCU----UGCGUuaGCCG- -5'
8040 5' -55.5 NC_001973.1 + 95725 0.71 0.728635
Target:  5'- gCGCCGGCUguUGgcGCAGGGCGCGcccgccgacaagAUCGuGCu -3'
miRNA:   3'- -GCGGCCGA--GC--UGUCUUGCGU------------UAGC-CG- -5'
8040 5' -55.5 NC_001973.1 + 122636 0.71 0.737382
Target:  5'- gCGCCGGCgucggUCGAgAGAgcaccugaacgcgGCGCcGUCGGg -3'
miRNA:   3'- -GCGGCCG-----AGCUgUCU-------------UGCGuUAGCCg -5'
8040 5' -55.5 NC_001973.1 + 2791 0.7 0.747015
Target:  5'- aCGCCuaaauugaGCUCGGCGG-ACGCGuaggauuuuacgcGUCGGCc -3'
miRNA:   3'- -GCGGc-------CGAGCUGUCuUGCGU-------------UAGCCG- -5'
8040 5' -55.5 NC_001973.1 + 16350 0.7 0.747015
Target:  5'- aCGCCuaaacucgaGCUCGGCGG-ACGCGuaggauuuuacgcGUCGGCu -3'
miRNA:   3'- -GCGGc--------CGAGCUGUCuUGCGU-------------UAGCCG- -5'
8040 5' -55.5 NC_001973.1 + 132538 0.7 0.747973
Target:  5'- cCGCCgGGCgcggCGGCGGGcucgaGCGCGG-CGGUg -3'
miRNA:   3'- -GCGG-CCGa---GCUGUCU-----UGCGUUaGCCG- -5'
8040 5' -55.5 NC_001973.1 + 121652 0.7 0.747973
Target:  5'- gCGCCGcCUCGA-AGGGCGCGucgcucgCGGCg -3'
miRNA:   3'- -GCGGCcGAGCUgUCUUGCGUua-----GCCG- -5'
8040 5' -55.5 NC_001973.1 + 123179 0.7 0.764099
Target:  5'- uCGCCGGCgCGcuccaGGAACGCGcagacgucgucgucGUCGGUc -3'
miRNA:   3'- -GCGGCCGaGCug---UCUUGCGU--------------UAGCCG- -5'
8040 5' -55.5 NC_001973.1 + 12346 0.7 0.765975
Target:  5'- -cUCGaGCUCGGCGG-ACGCGuaggauuuuacgcGUCGGCa -3'
miRNA:   3'- gcGGC-CGAGCUGUCuUGCGU-------------UAGCCG- -5'
8040 5' -55.5 NC_001973.1 + 72120 0.7 0.765975
Target:  5'- -cUCGaGCUCGGCGG-ACGCGuaggaucuuacgcGUCGGCa -3'
miRNA:   3'- gcGGC-CGAGCUGUCuUGCGU-------------UAGCCG- -5'
8040 5' -55.5 NC_001973.1 + 129225 0.7 0.765975
Target:  5'- -cUCGaGCUCGGCGG-ACGCGuaagaucuuacgcGUCGGCa -3'
miRNA:   3'- gcGGC-CGAGCUGUCuUGCGU-------------UAGCCG- -5'
8040 5' -55.5 NC_001973.1 + 130951 0.7 0.765975
Target:  5'- -cUCGaGCUCGGCGG-ACGCGuaagaucuuacgcGUCGGCg -3'
miRNA:   3'- gcGGC-CGAGCUGUCuUGCGU-------------UAGCCG- -5'
8040 5' -55.5 NC_001973.1 + 124279 0.7 0.765975
Target:  5'- cCGUCGGC-CGACGcucuGAUGCAaugguacGUCGGCg -3'
miRNA:   3'- -GCGGCCGaGCUGUc---UUGCGU-------UAGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.