miRNA display CGI


Results 81 - 100 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8040 5' -55.5 NC_001973.1 + 130951 0.7 0.765975
Target:  5'- -cUCGaGCUCGGCGG-ACGCGuaagaucuuacgcGUCGGCg -3'
miRNA:   3'- gcGGC-CGAGCUGUCuUGCGU-------------UAGCCG- -5'
8040 5' -55.5 NC_001973.1 + 124279 0.7 0.765975
Target:  5'- cCGUCGGC-CGACGcucuGAUGCAaugguacGUCGGCg -3'
miRNA:   3'- -GCGGCCGaGCUGUc---UUGCGU-------UAGCCG- -5'
8040 5' -55.5 NC_001973.1 + 95796 0.7 0.766911
Target:  5'- gGaCCGGCgUGACGGcuACGCGGaCGGCa -3'
miRNA:   3'- gC-GGCCGaGCUGUCu-UGCGUUaGCCG- -5'
8040 5' -55.5 NC_001973.1 + 139869 0.7 0.766911
Target:  5'- uGCUGGCaccacuugaUCGGCAagcucGAGCGCGugguGUCGGUg -3'
miRNA:   3'- gCGGCCG---------AGCUGU-----CUUGCGU----UAGCCG- -5'
8040 5' -55.5 NC_001973.1 + 68612 0.7 0.766911
Target:  5'- gCGCCgaGGC-CGAcCAGcuGACGCAAUgGGCc -3'
miRNA:   3'- -GCGG--CCGaGCU-GUC--UUGCGUUAgCCG- -5'
8040 5' -55.5 NC_001973.1 + 111745 0.7 0.766911
Target:  5'- cCGUCaGCUCGACGGAcgaccuGCGCGGcgucagaucugCGGCa -3'
miRNA:   3'- -GCGGcCGAGCUGUCU------UGCGUUa----------GCCG- -5'
8040 5' -55.5 NC_001973.1 + 9634 0.7 0.776209
Target:  5'- cCGCUGGCguUCGGCucgAGGGCGCGGUacagcCGGUc -3'
miRNA:   3'- -GCGGCCG--AGCUG---UCUUGCGUUA-----GCCG- -5'
8040 5' -55.5 NC_001973.1 + 57110 0.7 0.776209
Target:  5'- gGCCGGCUCacguaaaaguuGaACAGcuCGCAGUUGGg -3'
miRNA:   3'- gCGGCCGAG-----------C-UGUCuuGCGUUAGCCg -5'
8040 5' -55.5 NC_001973.1 + 98336 0.7 0.776209
Target:  5'- aCGCUGcaGCggCGGCGGcGCGCGuUCGGCc -3'
miRNA:   3'- -GCGGC--CGa-GCUGUCuUGCGUuAGCCG- -5'
8040 5' -55.5 NC_001973.1 + 61665 0.7 0.776209
Target:  5'- aGCUGGCaggGACAGucgcGGCGCGAagCGGCg -3'
miRNA:   3'- gCGGCCGag-CUGUC----UUGCGUUa-GCCG- -5'
8040 5' -55.5 NC_001973.1 + 29742 0.7 0.785379
Target:  5'- aGCCGGCcuucuUCGACGGccugugcgaGACGCuccaGGCg -3'
miRNA:   3'- gCGGCCG-----AGCUGUC---------UUGCGuuagCCG- -5'
8040 5' -55.5 NC_001973.1 + 79705 0.7 0.785379
Target:  5'- uGCCGGCuUUGGC---GCGUcgGGUCGGCa -3'
miRNA:   3'- gCGGCCG-AGCUGucuUGCG--UUAGCCG- -5'
8040 5' -55.5 NC_001973.1 + 4646 0.7 0.785379
Target:  5'- uGUCGGC--GGCGG-GCGCcGUCGGCg -3'
miRNA:   3'- gCGGCCGagCUGUCuUGCGuUAGCCG- -5'
8040 5' -55.5 NC_001973.1 + 129147 0.7 0.793518
Target:  5'- --aCGaGCUCGGCGG-ACGCGuaggaucuuacgcGUCGGCa -3'
miRNA:   3'- gcgGC-CGAGCUGUCuUGCGU-------------UAGCCG- -5'
8040 5' -55.5 NC_001973.1 + 7893 0.7 0.794415
Target:  5'- cCGCCGGCgcguugcaggCGuucuguugcgagGCGGAGCGCGugugcgCGGCc -3'
miRNA:   3'- -GCGGCCGa---------GC------------UGUCUUGCGUua----GCCG- -5'
8040 5' -55.5 NC_001973.1 + 97975 0.7 0.794415
Target:  5'- gGCacgGGCaCGACGcGGuCGCGGUCGGCg -3'
miRNA:   3'- gCGg--CCGaGCUGU-CUuGCGUUAGCCG- -5'
8040 5' -55.5 NC_001973.1 + 121325 0.7 0.794415
Target:  5'- gCGCCGacgaGCUcacCGACAGGcgguCGCGGUCGuGCg -3'
miRNA:   3'- -GCGGC----CGA---GCUGUCUu---GCGUUAGC-CG- -5'
8040 5' -55.5 NC_001973.1 + 88554 0.7 0.794415
Target:  5'- aCGCCGGCgUCGGCGcgcgcccuccGcACGCAcuggcgcgccucGUCGGUg -3'
miRNA:   3'- -GCGGCCG-AGCUGU----------CuUGCGU------------UAGCCG- -5'
8040 5' -55.5 NC_001973.1 + 56373 0.7 0.794415
Target:  5'- gCGCCGcGCUCGGCgccaGGcuCGguAUCGGg -3'
miRNA:   3'- -GCGGC-CGAGCUG----UCuuGCguUAGCCg -5'
8040 5' -55.5 NC_001973.1 + 98078 0.7 0.794415
Target:  5'- aGCCGcGCUCGuacCGGuAGCGCAccGUCaaGGCg -3'
miRNA:   3'- gCGGC-CGAGCu--GUC-UUGCGU--UAG--CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.