Results 21 - 40 of 225 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8040 | 5' | -55.5 | NC_001973.1 | + | 1234 | 0.66 | 0.925593 |
Target: 5'- cCGCCcaaGGCUCcgcGCAaGGCGCcGUCGGUu -3' miRNA: 3'- -GCGG---CCGAGc--UGUcUUGCGuUAGCCG- -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 75592 | 0.66 | 0.925593 |
Target: 5'- aGCgGGCggagCgGGCGGAGCGgCAAUCGa- -3' miRNA: 3'- gCGgCCGa---G-CUGUCUUGC-GUUAGCcg -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 12521 | 0.66 | 0.925593 |
Target: 5'- gGCCGGCUCaaauuGAACGguAUCGuCa -3' miRNA: 3'- gCGGCCGAGcugu-CUUGCguUAGCcG- -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 8785 | 0.66 | 0.925593 |
Target: 5'- gGCCGaGCgucaacgCGACGGAAC-Ccg-CGGCg -3' miRNA: 3'- gCGGC-CGa------GCUGUCUUGcGuuaGCCG- -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 105343 | 0.66 | 0.925593 |
Target: 5'- uCGCCGuguuguuCUCGACGaagcGGCGCGgaggcGUCGGCg -3' miRNA: 3'- -GCGGCc------GAGCUGUc---UUGCGU-----UAGCCG- -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 133458 | 0.66 | 0.925593 |
Target: 5'- gCGCgCGGgUCGcgcACGGAGCGCcagCGGg -3' miRNA: 3'- -GCG-GCCgAGC---UGUCUUGCGuuaGCCg -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 60267 | 0.66 | 0.923983 |
Target: 5'- cCGCCGcGCUCGACuucaacaacaucaaAACGCucaaguugacguUCGGCa -3' miRNA: 3'- -GCGGC-CGAGCUGuc------------UUGCGuu----------AGCCG- -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 141125 | 0.67 | 0.920146 |
Target: 5'- aCGCCGGCUCGACGc-ACGUGAaauUCa-- -3' miRNA: 3'- -GCGGCCGAGCUGUcuUGCGUU---AGccg -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 107115 | 0.67 | 0.920146 |
Target: 5'- cCGCCGGCUgucgCGAUAcGACGCGAgCGa- -3' miRNA: 3'- -GCGGCCGA----GCUGUcUUGCGUUaGCcg -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 144733 | 0.67 | 0.920146 |
Target: 5'- gCGCCaGGCggCGGCGGAGgCGgcCGAggaggCGGCg -3' miRNA: 3'- -GCGG-CCGa-GCUGUCUU-GC--GUUa----GCCG- -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 106014 | 0.67 | 0.920146 |
Target: 5'- gGCCGGUUCGcauCAGAcACGaauaAAaCGGCc -3' miRNA: 3'- gCGGCCGAGCu--GUCU-UGCg---UUaGCCG- -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 31928 | 0.67 | 0.920146 |
Target: 5'- uGCCGGUUgGACgcgcGGAAagGCGAUCaGCc -3' miRNA: 3'- gCGGCCGAgCUG----UCUUg-CGUUAGcCG- -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 75511 | 0.67 | 0.919589 |
Target: 5'- gGCCGuCUCGcACGGAgauucgaACGCGGacagCGGCu -3' miRNA: 3'- gCGGCcGAGC-UGUCU-------UGCGUUa---GCCG- -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 68382 | 0.67 | 0.916194 |
Target: 5'- gGCCGGCaagUCGcccagguACAGGuagaucgugcgcucgGCGCGcucGUCGGCc -3' miRNA: 3'- gCGGCCG---AGC-------UGUCU---------------UGCGU---UAGCCG- -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 25805 | 0.67 | 0.914465 |
Target: 5'- -aCCGGCgcgCGGCAcaccACGCAagcguccaccauGUCGGCg -3' miRNA: 3'- gcGGCCGa--GCUGUcu--UGCGU------------UAGCCG- -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 8631 | 0.67 | 0.914465 |
Target: 5'- cCGCCgaGGC-CGACgAGAaacgccaacgugACGCuguUCGGCg -3' miRNA: 3'- -GCGG--CCGaGCUG-UCU------------UGCGuu-AGCCG- -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 139436 | 0.67 | 0.914465 |
Target: 5'- -aCCGGC-CuGCAGGAUGCcgauagacaGAUCGGCc -3' miRNA: 3'- gcGGCCGaGcUGUCUUGCG---------UUAGCCG- -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 81821 | 0.67 | 0.914465 |
Target: 5'- cCGCCGGCggCGACGaGACGaCGAgcucaGGUc -3' miRNA: 3'- -GCGGCCGa-GCUGUcUUGC-GUUag---CCG- -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 69406 | 0.67 | 0.914465 |
Target: 5'- gCGCCGugUCGG-AGGACGCAucCGGCg -3' miRNA: 3'- -GCGGCcgAGCUgUCUUGCGUuaGCCG- -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 31724 | 0.67 | 0.914465 |
Target: 5'- uGCCGuuGCgCGACAGcAGCGCcgGGUgGGCc -3' miRNA: 3'- gCGGC--CGaGCUGUC-UUGCG--UUAgCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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