miRNA display CGI


Results 41 - 60 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8040 5' -55.5 NC_001973.1 + 124798 0.67 0.913884
Target:  5'- cCGCCGGCgagggccggggccUCGAUcGGACGguCGAggaguUCGGCa -3'
miRNA:   3'- -GCGGCCG-------------AGCUGuCUUGC--GUU-----AGCCG- -5'
8040 5' -55.5 NC_001973.1 + 67625 0.67 0.912715
Target:  5'- uGCCGGCcgCGuCcgAGAgcgugccgaggaacACGCAGUUGGUg -3'
miRNA:   3'- gCGGCCGa-GCuG--UCU--------------UGCGUUAGCCG- -5'
8040 5' -55.5 NC_001973.1 + 52161 0.67 0.909153
Target:  5'- aGCCGGUgggcgccguacuuggCGAC-GAGCGCGgcgggGUCGcGCg -3'
miRNA:   3'- gCGGCCGa--------------GCUGuCUUGCGU-----UAGC-CG- -5'
8040 5' -55.5 NC_001973.1 + 29002 0.67 0.908551
Target:  5'- gCGCCGGCggcugggC-ACAGcACGCGucgCGGUa -3'
miRNA:   3'- -GCGGCCGa------GcUGUCuUGCGUua-GCCG- -5'
8040 5' -55.5 NC_001973.1 + 8394 0.67 0.908551
Target:  5'- aGCCGcaucuaCUUGGCGcuGGGCGCGAaCGGCa -3'
miRNA:   3'- gCGGCc-----GAGCUGU--CUUGCGUUaGCCG- -5'
8040 5' -55.5 NC_001973.1 + 41666 0.67 0.908551
Target:  5'- uCGCCuucUUCGACGGcGCGCG-UCGGUg -3'
miRNA:   3'- -GCGGcc-GAGCUGUCuUGCGUuAGCCG- -5'
8040 5' -55.5 NC_001973.1 + 87097 0.67 0.908551
Target:  5'- uGCCGuGC-CGGCAcGuguGCGCGugcgCGGCg -3'
miRNA:   3'- gCGGC-CGaGCUGU-Cu--UGCGUua--GCCG- -5'
8040 5' -55.5 NC_001973.1 + 159483 0.67 0.908551
Target:  5'- aCGCCGGUccUUGgaACAGAgGCGC-GUCGGg -3'
miRNA:   3'- -GCGGCCG--AGC--UGUCU-UGCGuUAGCCg -5'
8040 5' -55.5 NC_001973.1 + 114689 0.67 0.908551
Target:  5'- cCGCCGaGCUCGAguuuGGGCGUGAugucaUCGGg -3'
miRNA:   3'- -GCGGC-CGAGCUgu--CUUGCGUU-----AGCCg -5'
8040 5' -55.5 NC_001973.1 + 132847 0.67 0.907947
Target:  5'- aGCCGGCcagGAaGGAGCGCGAcauguccUCGGg -3'
miRNA:   3'- gCGGCCGag-CUgUCUUGCGUU-------AGCCg -5'
8040 5' -55.5 NC_001973.1 + 74483 0.67 0.902406
Target:  5'- gCGCCcGCUCGACGcgucGAACGUGugguuuUCGGg -3'
miRNA:   3'- -GCGGcCGAGCUGU----CUUGCGUu-----AGCCg -5'
8040 5' -55.5 NC_001973.1 + 95544 0.67 0.902406
Target:  5'- gCGCCGGCgaCGACAaGAuCGCcGUCguggacuacgGGCg -3'
miRNA:   3'- -GCGGCCGa-GCUGU-CUuGCGuUAG----------CCG- -5'
8040 5' -55.5 NC_001973.1 + 32383 0.67 0.902406
Target:  5'- uGCCGaaaUCGACGGGGCuGCuccaCGGCg -3'
miRNA:   3'- gCGGCcg-AGCUGUCUUG-CGuua-GCCG- -5'
8040 5' -55.5 NC_001973.1 + 56337 0.67 0.902406
Target:  5'- gCGCCGcGCUCG-CGGc-CGCGcUCGGg -3'
miRNA:   3'- -GCGGC-CGAGCuGUCuuGCGUuAGCCg -5'
8040 5' -55.5 NC_001973.1 + 112113 0.67 0.901779
Target:  5'- uCGCCGGCaaccggUgGACGGAGgggcUGCAGUucgugcgCGGCa -3'
miRNA:   3'- -GCGGCCG------AgCUGUCUU----GCGUUA-------GCCG- -5'
8040 5' -55.5 NC_001973.1 + 2679 0.67 0.901779
Target:  5'- aGCuCGaGCUCGGCc-GACGCGuaaaaucuuacgcGUCGGCc -3'
miRNA:   3'- gCG-GC-CGAGCUGucUUGCGU-------------UAGCCG- -5'
8040 5' -55.5 NC_001973.1 + 130617 0.67 0.901149
Target:  5'- -aCCGaGCUCGGCGGAcGCGUAGgauuuuacgugcCGGCa -3'
miRNA:   3'- gcGGC-CGAGCUGUCU-UGCGUUa-----------GCCG- -5'
8040 5' -55.5 NC_001973.1 + 30493 0.67 0.896032
Target:  5'- aGUCgGGCaCGACGGuGCGCAGggCGGUu -3'
miRNA:   3'- gCGG-CCGaGCUGUCuUGCGUUa-GCCG- -5'
8040 5' -55.5 NC_001973.1 + 118041 0.67 0.896032
Target:  5'- gCGCCGuucguGCUgcacUGGCAGGACGC---CGGCg -3'
miRNA:   3'- -GCGGC-----CGA----GCUGUCUUGCGuuaGCCG- -5'
8040 5' -55.5 NC_001973.1 + 27859 0.67 0.896032
Target:  5'- gCGCUGGCggccgCGGCcgcGGGCGCGggCGcGCu -3'
miRNA:   3'- -GCGGCCGa----GCUGu--CUUGCGUuaGC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.