Results 61 - 80 of 225 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8040 | 5' | -55.5 | NC_001973.1 | + | 27859 | 0.67 | 0.896032 |
Target: 5'- gCGCUGGCggccgCGGCcgcGGGCGCGggCGcGCu -3' miRNA: 3'- -GCGGCCGa----GCUGu--CUUGCGUuaGC-CG- -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 80153 | 0.67 | 0.895382 |
Target: 5'- gCGCCGaacucgCGAUAGuAGCGCAGcaucugcUCGGCg -3' miRNA: 3'- -GCGGCcga---GCUGUC-UUGCGUU-------AGCCG- -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 159115 | 0.67 | 0.889431 |
Target: 5'- uGCuCGGCccgCGACuGAGCG-AGUCGGa -3' miRNA: 3'- gCG-GCCGa--GCUGuCUUGCgUUAGCCg -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 133787 | 0.67 | 0.889431 |
Target: 5'- aCGgUGuGCUCGuCGGuGCGCAGguaCGGCg -3' miRNA: 3'- -GCgGC-CGAGCuGUCuUGCGUUa--GCCG- -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 36317 | 0.67 | 0.889431 |
Target: 5'- gCGCCgcGGC-CGACGcggccGACGCGGgccUCGGCg -3' miRNA: 3'- -GCGG--CCGaGCUGUc----UUGCGUU---AGCCG- -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 114611 | 0.67 | 0.888759 |
Target: 5'- cCGCCGaGCUCaaguuaaGGCAuGAUGUcAUCGGCu -3' miRNA: 3'- -GCGGC-CGAG-------CUGUcUUGCGuUAGCCG- -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 56553 | 0.67 | 0.888759 |
Target: 5'- nCGCCGaGCUCGAuauCGGGcucuaugACGgGcgCGGCu -3' miRNA: 3'- -GCGGC-CGAGCU---GUCU-------UGCgUuaGCCG- -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 130774 | 0.67 | 0.888759 |
Target: 5'- -cUCGaGCUCGGCGG-GCGCGuaggauuuuacgcGUCGGCc -3' miRNA: 3'- gcGGC-CGAGCUGUCuUGCGU-------------UAGCCG- -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 45262 | 0.68 | 0.882609 |
Target: 5'- uGCgGGC-CGGCAaaguAGCGCGGauccUCGGCg -3' miRNA: 3'- gCGgCCGaGCUGUc---UUGCGUU----AGCCG- -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 134846 | 0.68 | 0.882609 |
Target: 5'- aGCUuacucuugGGCU-GGCAGAgcACGCAGccUCGGCc -3' miRNA: 3'- gCGG--------CCGAgCUGUCU--UGCGUU--AGCCG- -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 56184 | 0.68 | 0.882609 |
Target: 5'- gCGgCGcGCUCGACGuAGuCGCuuucGUCGGCg -3' miRNA: 3'- -GCgGC-CGAGCUGUcUU-GCGu---UAGCCG- -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 56410 | 0.68 | 0.882609 |
Target: 5'- aGCCGaGCUCGGuaucgggcuCGGGGCuaAAcUCGGCg -3' miRNA: 3'- gCGGC-CGAGCU---------GUCUUGcgUU-AGCCG- -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 74350 | 0.68 | 0.882609 |
Target: 5'- gGCCGGCggCG-CAGcGGCGCAccgccGUCuGGCc -3' miRNA: 3'- gCGGCCGa-GCuGUC-UUGCGU-----UAG-CCG- -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 51887 | 0.68 | 0.875568 |
Target: 5'- uCGCCGGCU-GugAGGAacguCGCGGaggacUCGGUc -3' miRNA: 3'- -GCGGCCGAgCugUCUU----GCGUU-----AGCCG- -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 4457 | 0.68 | 0.875568 |
Target: 5'- gCGCCGuGC-CGACA-AACGCAAacUCGuGCc -3' miRNA: 3'- -GCGGC-CGaGCUGUcUUGCGUU--AGC-CG- -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 55426 | 0.68 | 0.874852 |
Target: 5'- uCGUCGGCggCGGCGGGcccgacgGCGCGG-CGGa -3' miRNA: 3'- -GCGGCCGa-GCUGUCU-------UGCGUUaGCCg -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 106581 | 0.68 | 0.871241 |
Target: 5'- gCGCCaaGCUCGGCgccgccgucaagcgaAcGAGCGCGAcCGGCg -3' miRNA: 3'- -GCGGc-CGAGCUG---------------U-CUUGCGUUaGCCG- -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 122969 | 0.68 | 0.868314 |
Target: 5'- aCGCCGGCUCuGuuuuCGcGAACGCcguccaccgCGGCc -3' miRNA: 3'- -GCGGCCGAG-Cu---GU-CUUGCGuua------GCCG- -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 122724 | 0.68 | 0.868314 |
Target: 5'- cCGUCGGUcgCGACGGAcaGCAGcuugcgCGGCa -3' miRNA: 3'- -GCGGCCGa-GCUGUCUugCGUUa-----GCCG- -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 83819 | 0.68 | 0.868314 |
Target: 5'- gGCCGcGCgCGGCGGAGCuCgAAUCGGa -3' miRNA: 3'- gCGGC-CGaGCUGUCUUGcG-UUAGCCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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