miRNA display CGI


Results 1 - 20 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8040 5' -55.5 NC_001973.1 + 1234 0.66 0.925593
Target:  5'- cCGCCcaaGGCUCcgcGCAaGGCGCcGUCGGUu -3'
miRNA:   3'- -GCGG---CCGAGc--UGUcUUGCGuUAGCCG- -5'
8040 5' -55.5 NC_001973.1 + 1971 0.73 0.587978
Target:  5'- gCGuuGGCuUCGAC-GAGCGCAc-CGGCa -3'
miRNA:   3'- -GCggCCG-AGCUGuCUUGCGUuaGCCG- -5'
8040 5' -55.5 NC_001973.1 + 2679 0.67 0.901779
Target:  5'- aGCuCGaGCUCGGCc-GACGCGuaaaaucuuacgcGUCGGCc -3'
miRNA:   3'- gCG-GC-CGAGCUGucUUGCGU-------------UAGCCG- -5'
8040 5' -55.5 NC_001973.1 + 2791 0.7 0.747015
Target:  5'- aCGCCuaaauugaGCUCGGCGG-ACGCGuaggauuuuacgcGUCGGCc -3'
miRNA:   3'- -GCGGc-------CGAGCUGUCuUGCGU-------------UAGCCG- -5'
8040 5' -55.5 NC_001973.1 + 3561 0.74 0.549005
Target:  5'- aGCCGGCggggcgcgcgaugacCGACGGcGCGCGcuUCGGCu -3'
miRNA:   3'- gCGGCCGa--------------GCUGUCuUGCGUu-AGCCG- -5'
8040 5' -55.5 NC_001973.1 + 3853 0.68 0.860094
Target:  5'- gGCCGGCUCGucgauguGCAuGACGaucguCAGcUCGGCg -3'
miRNA:   3'- gCGGCCGAGC-------UGUcUUGC-----GUU-AGCCG- -5'
8040 5' -55.5 NC_001973.1 + 4131 0.69 0.803307
Target:  5'- gGCCGcGUUCGACc--AC-CAGUCGGCg -3'
miRNA:   3'- gCGGC-CGAGCUGucuUGcGUUAGCCG- -5'
8040 5' -55.5 NC_001973.1 + 4457 0.68 0.875568
Target:  5'- gCGCCGuGC-CGACA-AACGCAAacUCGuGCc -3'
miRNA:   3'- -GCGGC-CGaGCUGUcUUGCGUU--AGC-CG- -5'
8040 5' -55.5 NC_001973.1 + 4573 0.69 0.803307
Target:  5'- uGuuGGC-CG-UAGAACGCGAUucCGGCc -3'
miRNA:   3'- gCggCCGaGCuGUCUUGCGUUA--GCCG- -5'
8040 5' -55.5 NC_001973.1 + 4646 0.7 0.785379
Target:  5'- uGUCGGC--GGCGG-GCGCcGUCGGCg -3'
miRNA:   3'- gCGGCCGagCUGUCuUGCGuUAGCCG- -5'
8040 5' -55.5 NC_001973.1 + 5864 0.69 0.837271
Target:  5'- gCGCCGGCgucUCGAgAGGcuggugcgGCGCAG-CGcGCg -3'
miRNA:   3'- -GCGGCCG---AGCUgUCU--------UGCGUUaGC-CG- -5'
8040 5' -55.5 NC_001973.1 + 5957 0.69 0.845324
Target:  5'- gGCCGGCggaugCGACGuccugcacuUGCAcgCGGCg -3'
miRNA:   3'- gCGGCCGa----GCUGUcuu------GCGUuaGCCG- -5'
8040 5' -55.5 NC_001973.1 + 6220 0.71 0.708969
Target:  5'- uGCCGGCgCGGCgcccugucGGAuuGCGCGAaaacgccuguUCGGCg -3'
miRNA:   3'- gCGGCCGaGCUG--------UCU--UGCGUU----------AGCCG- -5'
8040 5' -55.5 NC_001973.1 + 7863 0.66 0.930805
Target:  5'- aGCUGGCgCGcCAGGGCGCGuUUuGCa -3'
miRNA:   3'- gCGGCCGaGCuGUCUUGCGUuAGcCG- -5'
8040 5' -55.5 NC_001973.1 + 7893 0.7 0.794415
Target:  5'- cCGCCGGCgcguugcaggCGuucuguugcgagGCGGAGCGCGugugcgCGGCc -3'
miRNA:   3'- -GCGGCCGa---------GC------------UGUCUUGCGUua----GCCG- -5'
8040 5' -55.5 NC_001973.1 + 8112 0.72 0.689048
Target:  5'- gGCCGGCUCGuGCAGA------UCGGCa -3'
miRNA:   3'- gCGGCCGAGC-UGUCUugcguuAGCCG- -5'
8040 5' -55.5 NC_001973.1 + 8170 0.75 0.499357
Target:  5'- cCGUCGGCgggUCGACGGAcgaGCGCGccgaCGGCa -3'
miRNA:   3'- -GCGGCCG---AGCUGUCU---UGCGUua--GCCG- -5'
8040 5' -55.5 NC_001973.1 + 8394 0.67 0.908551
Target:  5'- aGCCGcaucuaCUUGGCGcuGGGCGCGAaCGGCa -3'
miRNA:   3'- gCGGCc-----GAGCUGU--CUUGCGUUaGCCG- -5'
8040 5' -55.5 NC_001973.1 + 8514 0.72 0.648716
Target:  5'- aGCCGGgaCGAUu--GCGCGAcgcUCGGCu -3'
miRNA:   3'- gCGGCCgaGCUGucuUGCGUU---AGCCG- -5'
8040 5' -55.5 NC_001973.1 + 8631 0.67 0.914465
Target:  5'- cCGCCgaGGC-CGACgAGAaacgccaacgugACGCuguUCGGCg -3'
miRNA:   3'- -GCGG--CCGaGCUG-UCU------------UGCGuu-AGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.