miRNA display CGI


Results 41 - 60 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8040 5' -55.5 NC_001973.1 + 25805 0.67 0.914465
Target:  5'- -aCCGGCgcgCGGCAcaccACGCAagcguccaccauGUCGGCg -3'
miRNA:   3'- gcGGCCGa--GCUGUcu--UGCGU------------UAGCCG- -5'
8040 5' -55.5 NC_001973.1 + 26171 0.66 0.935782
Target:  5'- cCGCCGGC---GCGG-GCGCGucgaCGGCg -3'
miRNA:   3'- -GCGGCCGagcUGUCuUGCGUua--GCCG- -5'
8040 5' -55.5 NC_001973.1 + 27859 0.67 0.896032
Target:  5'- gCGCUGGCggccgCGGCcgcGGGCGCGggCGcGCu -3'
miRNA:   3'- -GCGGCCGa----GCUGu--CUUGCGUuaGC-CG- -5'
8040 5' -55.5 NC_001973.1 + 28079 0.71 0.728635
Target:  5'- gCGCgGGCaCGACgAGGACGuCAuugCGGCg -3'
miRNA:   3'- -GCGgCCGaGCUG-UCUUGC-GUua-GCCG- -5'
8040 5' -55.5 NC_001973.1 + 28281 0.72 0.658839
Target:  5'- uCGCCGcGCcucguggCGGCcGAGCGCcgcGUCGGCg -3'
miRNA:   3'- -GCGGC-CGa------GCUGuCUUGCGu--UAGCCG- -5'
8040 5' -55.5 NC_001973.1 + 28398 0.72 0.648716
Target:  5'- gCGCCGGCgacgcCGuCAguGAGCGCGcUUGGCg -3'
miRNA:   3'- -GCGGCCGa----GCuGU--CUUGCGUuAGCCG- -5'
8040 5' -55.5 NC_001973.1 + 28654 0.69 0.845324
Target:  5'- aGCUGcGCgagcgCGGCGucGAGCGCGcugccaaaGUCGGCg -3'
miRNA:   3'- gCGGC-CGa----GCUGU--CUUGCGU--------UAGCCG- -5'
8040 5' -55.5 NC_001973.1 + 28962 0.69 0.820625
Target:  5'- gGCCGGCagUCgGGCGGcGACGCGuuguaGUCGGg -3'
miRNA:   3'- gCGGCCG--AG-CUGUC-UUGCGU-----UAGCCg -5'
8040 5' -55.5 NC_001973.1 + 29002 0.67 0.908551
Target:  5'- gCGCCGGCggcugggC-ACAGcACGCGucgCGGUa -3'
miRNA:   3'- -GCGGCCGa------GcUGUCuUGCGUua-GCCG- -5'
8040 5' -55.5 NC_001973.1 + 29742 0.7 0.785379
Target:  5'- aGCCGGCcuucuUCGACGGccugugcgaGACGCuccaGGCg -3'
miRNA:   3'- gCGGCCG-----AGCUGUC---------UUGCGuuagCCG- -5'
8040 5' -55.5 NC_001973.1 + 29971 0.75 0.489849
Target:  5'- aCGCCGGCUCGguGguGGGCGCGuauAUCuGCg -3'
miRNA:   3'- -GCGGCCGAGC--UguCUUGCGU---UAGcCG- -5'
8040 5' -55.5 NC_001973.1 + 30368 0.75 0.480428
Target:  5'- cCGCCGGCgcggCGACucGggUGCGGgcCGGCg -3'
miRNA:   3'- -GCGGCCGa---GCUGu-CuuGCGUUa-GCCG- -5'
8040 5' -55.5 NC_001973.1 + 30493 0.67 0.896032
Target:  5'- aGUCgGGCaCGACGGuGCGCAGggCGGUu -3'
miRNA:   3'- gCGG-CCGaGCUGUCuUGCGUUa-GCCG- -5'
8040 5' -55.5 NC_001973.1 + 30686 0.73 0.598064
Target:  5'- aGuuGGCgaaGAC-GAACGCGucGUCGGCg -3'
miRNA:   3'- gCggCCGag-CUGuCUUGCGU--UAGCCG- -5'
8040 5' -55.5 NC_001973.1 + 31724 0.67 0.914465
Target:  5'- uGCCGuuGCgCGACAGcAGCGCcgGGUgGGCc -3'
miRNA:   3'- gCGGC--CGaGCUGUC-UUGCG--UUAgCCG- -5'
8040 5' -55.5 NC_001973.1 + 31928 0.67 0.920146
Target:  5'- uGCCGGUUgGACgcgcGGAAagGCGAUCaGCc -3'
miRNA:   3'- gCGGCCGAgCUG----UCUUg-CGUUAGcCG- -5'
8040 5' -55.5 NC_001973.1 + 32302 0.66 0.940525
Target:  5'- aCGCCaGCUCGucguucagauACAGGGCGUccgCGGg -3'
miRNA:   3'- -GCGGcCGAGC----------UGUCUUGCGuuaGCCg -5'
8040 5' -55.5 NC_001973.1 + 32383 0.67 0.902406
Target:  5'- uGCCGaaaUCGACGGGGCuGCuccaCGGCg -3'
miRNA:   3'- gCGGCcg-AGCUGUCUUG-CGuua-GCCG- -5'
8040 5' -55.5 NC_001973.1 + 32575 0.69 0.803307
Target:  5'- cCGUCGGCUCGGCGcgcugcgacacGGACGCGAa-GGa -3'
miRNA:   3'- -GCGGCCGAGCUGU-----------CUUGCGUUagCCg -5'
8040 5' -55.5 NC_001973.1 + 35139 0.66 0.940525
Target:  5'- cCGCCGGCgacaGGCcccgcuuGAugGCGAcgcUGGCg -3'
miRNA:   3'- -GCGGCCGag--CUGu------CUugCGUUa--GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.