miRNA display CGI


Results 61 - 80 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8040 5' -55.5 NC_001973.1 + 35675 0.74 0.53815
Target:  5'- gGCgCGGC-CGACGGcGGCGCGGUggCGGCg -3'
miRNA:   3'- gCG-GCCGaGCUGUC-UUGCGUUA--GCCG- -5'
8040 5' -55.5 NC_001973.1 + 36317 0.67 0.889431
Target:  5'- gCGCCgcGGC-CGACGcggccGACGCGGgccUCGGCg -3'
miRNA:   3'- -GCGG--CCGaGCUGUc----UUGCGUU---AGCCG- -5'
8040 5' -55.5 NC_001973.1 + 38590 0.69 0.820625
Target:  5'- cCGCCGGCgcacCGccaacaGCAGGuaGCGCuuguaacacuGUCGGCg -3'
miRNA:   3'- -GCGGCCGa---GC------UGUCU--UGCGu---------UAGCCG- -5'
8040 5' -55.5 NC_001973.1 + 38643 0.75 0.499357
Target:  5'- gGCCGuGCUCG-CG--GCGCAGUCGGUc -3'
miRNA:   3'- gCGGC-CGAGCuGUcuUGCGUUAGCCG- -5'
8040 5' -55.5 NC_001973.1 + 38967 0.76 0.46554
Target:  5'- gGCCGGCgagcguuuauaaacCGACGGcgguGCGCAGUCGcGCg -3'
miRNA:   3'- gCGGCCGa-------------GCUGUCu---UGCGUUAGC-CG- -5'
8040 5' -55.5 NC_001973.1 + 39393 0.74 0.557936
Target:  5'- -aCCuGCUCGACGGcGCGCGccagGUCGGCc -3'
miRNA:   3'- gcGGcCGAGCUGUCuUGCGU----UAGCCG- -5'
8040 5' -55.5 NC_001973.1 + 40464 0.68 0.867577
Target:  5'- uGCCGGCguugCGAUuGAaaucgacGCGCGucagCGGCc -3'
miRNA:   3'- gCGGCCGa---GCUGuCU-------UGCGUua--GCCG- -5'
8040 5' -55.5 NC_001973.1 + 41666 0.67 0.908551
Target:  5'- uCGCCuucUUCGACGGcGCGCG-UCGGUg -3'
miRNA:   3'- -GCGGcc-GAGCUGUCuUGCGUuAGCCG- -5'
8040 5' -55.5 NC_001973.1 + 42868 0.66 0.945037
Target:  5'- uGUCGaGCgagCGGCGGcGCGUGAUCuGCa -3'
miRNA:   3'- gCGGC-CGa--GCUGUCuUGCGUUAGcCG- -5'
8040 5' -55.5 NC_001973.1 + 43623 0.68 0.860851
Target:  5'- gCGCCGaccaGCUCGAgCAGcAGC-CuGUCGGCg -3'
miRNA:   3'- -GCGGC----CGAGCU-GUC-UUGcGuUAGCCG- -5'
8040 5' -55.5 NC_001973.1 + 44787 0.68 0.868314
Target:  5'- uGCUGGCgUCGAacu--CGuCGAUCGGCg -3'
miRNA:   3'- gCGGCCG-AGCUgucuuGC-GUUAGCCG- -5'
8040 5' -55.5 NC_001973.1 + 45262 0.68 0.882609
Target:  5'- uGCgGGC-CGGCAaaguAGCGCGGauccUCGGCg -3'
miRNA:   3'- gCGgCCGaGCUGUc---UUGCGUU----AGCCG- -5'
8040 5' -55.5 NC_001973.1 + 45600 0.74 0.528346
Target:  5'- cCGUC-GC-CGGCGGAGCGCG-UCGGCg -3'
miRNA:   3'- -GCGGcCGaGCUGUCUUGCGUuAGCCG- -5'
8040 5' -55.5 NC_001973.1 + 47803 0.66 0.940525
Target:  5'- gCGCCGGC-CGACGcguGCGCcaAAUCGcccGCc -3'
miRNA:   3'- -GCGGCCGaGCUGUcu-UGCG--UUAGC---CG- -5'
8040 5' -55.5 NC_001973.1 + 49722 0.69 0.837271
Target:  5'- -uCCGGC-CGAC-GAGCGCAAgcaccCGGUg -3'
miRNA:   3'- gcGGCCGaGCUGuCUUGCGUUa----GCCG- -5'
8040 5' -55.5 NC_001973.1 + 49787 0.71 0.69804
Target:  5'- uCGCCGGCcagaggCGcuacguGCAGAgccagaaGCGCAAgcUCGGCg -3'
miRNA:   3'- -GCGGCCGa-----GC------UGUCU-------UGCGUU--AGCCG- -5'
8040 5' -55.5 NC_001973.1 + 51887 0.68 0.875568
Target:  5'- uCGCCGGCU-GugAGGAacguCGCGGaggacUCGGUc -3'
miRNA:   3'- -GCGGCCGAgCugUCUU----GCGUU-----AGCCG- -5'
8040 5' -55.5 NC_001973.1 + 52161 0.67 0.909153
Target:  5'- aGCCGGUgggcgccguacuuggCGAC-GAGCGCGgcgggGUCGcGCg -3'
miRNA:   3'- gCGGCCGa--------------GCUGuCUUGCGU-----UAGC-CG- -5'
8040 5' -55.5 NC_001973.1 + 52633 0.68 0.860851
Target:  5'- aCGCCGG-UCGACgAGcACGCccgccacGUUGGCg -3'
miRNA:   3'- -GCGGCCgAGCUG-UCuUGCGu------UAGCCG- -5'
8040 5' -55.5 NC_001973.1 + 53405 0.73 0.587978
Target:  5'- cCGCCGGCacgGGCGGAGCGCcg--GGCg -3'
miRNA:   3'- -GCGGCCGag-CUGUCUUGCGuuagCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.