miRNA display CGI


Results 81 - 100 of 225 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8040 5' -55.5 NC_001973.1 + 53591 0.72 0.642636
Target:  5'- gCGCCGGCgccgaggauuauuuaUCGACuG-GCGUuAUCGGCg -3'
miRNA:   3'- -GCGGCCG---------------AGCUGuCuUGCGuUAGCCG- -5'
8040 5' -55.5 NC_001973.1 + 53857 0.69 0.812046
Target:  5'- cCGgCGGCggCGGCGccgccGAGCGCGG-CGGCc -3'
miRNA:   3'- -GCgGCCGa-GCUGU-----CUUGCGUUaGCCG- -5'
8040 5' -55.5 NC_001973.1 + 53990 0.76 0.425891
Target:  5'- uGCCGGCUgucguUGACGuccgcguagucGAACGCGAUCGGg -3'
miRNA:   3'- gCGGCCGA-----GCUGU-----------CUUGCGUUAGCCg -5'
8040 5' -55.5 NC_001973.1 + 55426 0.68 0.874852
Target:  5'- uCGUCGGCggCGGCGGGcccgacgGCGCGG-CGGa -3'
miRNA:   3'- -GCGGCCGa-GCUGUCU-------UGCGUUaGCCg -5'
8040 5' -55.5 NC_001973.1 + 55807 0.68 0.852408
Target:  5'- aCGCuCGGCUCGAacggcgaCAGAGgccUGCGGacCGGCg -3'
miRNA:   3'- -GCG-GCCGAGCU-------GUCUU---GCGUUa-GCCG- -5'
8040 5' -55.5 NC_001973.1 + 56184 0.68 0.882609
Target:  5'- gCGgCGcGCUCGACGuAGuCGCuuucGUCGGCg -3'
miRNA:   3'- -GCgGC-CGAGCUGUcUU-GCGu---UAGCCG- -5'
8040 5' -55.5 NC_001973.1 + 56337 0.67 0.902406
Target:  5'- gCGCCGcGCUCG-CGGc-CGCGcUCGGg -3'
miRNA:   3'- -GCGGC-CGAGCuGUCuuGCGUuAGCCg -5'
8040 5' -55.5 NC_001973.1 + 56373 0.7 0.794415
Target:  5'- gCGCCGcGCUCGGCgccaGGcuCGguAUCGGg -3'
miRNA:   3'- -GCGGC-CGAGCUG----UCuuGCguUAGCCg -5'
8040 5' -55.5 NC_001973.1 + 56410 0.68 0.882609
Target:  5'- aGCCGaGCUCGGuaucgggcuCGGGGCuaAAcUCGGCg -3'
miRNA:   3'- gCGGC-CGAGCU---------GUCUUGcgUU-AGCCG- -5'
8040 5' -55.5 NC_001973.1 + 56462 0.73 0.617288
Target:  5'- gGCgGGCUCGGCgccaagcucgggcGGGGCGgGcUCGGCg -3'
miRNA:   3'- gCGgCCGAGCUG-------------UCUUGCgUuAGCCG- -5'
8040 5' -55.5 NC_001973.1 + 56516 0.73 0.617288
Target:  5'- gGCgGGCUCGGCgccaagcucgggcGGGGCGgGcUCGGCg -3'
miRNA:   3'- gCGgCCGAGCUG-------------UCUUGCgUuAGCCG- -5'
8040 5' -55.5 NC_001973.1 + 56553 0.67 0.888759
Target:  5'- nCGCCGaGCUCGAuauCGGGcucuaugACGgGcgCGGCu -3'
miRNA:   3'- -GCGGC-CGAGCU---GUCU-------UGCgUuaGCCG- -5'
8040 5' -55.5 NC_001973.1 + 57110 0.7 0.776209
Target:  5'- gGCCGGCUCacguaaaaguuGaACAGcuCGCAGUUGGg -3'
miRNA:   3'- gCGGCCGAG-----------C-UGUCuuGCGUUAGCCg -5'
8040 5' -55.5 NC_001973.1 + 59879 0.73 0.598064
Target:  5'- gCGCgCGGCcccaaCGGCGGcGCGguGUCGGCc -3'
miRNA:   3'- -GCG-GCCGa----GCUGUCuUGCguUAGCCG- -5'
8040 5' -55.5 NC_001973.1 + 60267 0.66 0.923983
Target:  5'- cCGCCGcGCUCGACuucaacaacaucaaAACGCucaaguugacguUCGGCa -3'
miRNA:   3'- -GCGGC-CGAGCUGuc------------UUGCGuu----------AGCCG- -5'
8040 5' -55.5 NC_001973.1 + 61098 0.78 0.351444
Target:  5'- cCGCgCGGC-CGACGGAGCaGCGG-CGGCg -3'
miRNA:   3'- -GCG-GCCGaGCUGUCUUG-CGUUaGCCG- -5'
8040 5' -55.5 NC_001973.1 + 61665 0.7 0.776209
Target:  5'- aGCUGGCaggGACAGucgcGGCGCGAagCGGCg -3'
miRNA:   3'- gCGGCCGag-CUGUC----UUGCGUUa-GCCG- -5'
8040 5' -55.5 NC_001973.1 + 62940 0.72 0.668941
Target:  5'- gGCCGGCgUCGuCAGuagacuuGCGCGAgcccgcCGGCg -3'
miRNA:   3'- gCGGCCG-AGCuGUCu------UGCGUUa-----GCCG- -5'
8040 5' -55.5 NC_001973.1 + 64108 0.73 0.628439
Target:  5'- gGCCgacGGCUCGACGGGGCGgugccgcaucaaCGAcCGGCu -3'
miRNA:   3'- gCGG---CCGAGCUGUCUUGC------------GUUaGCCG- -5'
8040 5' -55.5 NC_001973.1 + 64261 0.71 0.699036
Target:  5'- gCGCCaGUUCGGCGaGGCGCAcUCGGa -3'
miRNA:   3'- -GCGGcCGAGCUGUcUUGCGUuAGCCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.