miRNA display CGI


Results 21 - 40 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8040 5' -55.5 NC_001973.1 + 141125 0.67 0.920146
Target:  5'- aCGCCGGCUCGACGc-ACGUGAaauUCa-- -3'
miRNA:   3'- -GCGGCCGAGCUGUcuUGCGUU---AGccg -5'
8040 5' -55.5 NC_001973.1 + 139869 0.7 0.766911
Target:  5'- uGCUGGCaccacuugaUCGGCAagcucGAGCGCGugguGUCGGUg -3'
miRNA:   3'- gCGGCCG---------AGCUGU-----CUUGCGU----UAGCCG- -5'
8040 5' -55.5 NC_001973.1 + 139436 0.67 0.914465
Target:  5'- -aCCGGC-CuGCAGGAUGCcgauagacaGAUCGGCc -3'
miRNA:   3'- gcGGCCGaGcUGUCUUGCG---------UUAGCCG- -5'
8040 5' -55.5 NC_001973.1 + 139010 0.69 0.82401
Target:  5'- cCGCCGGCgccagcagcucccgCcACAuGAACGCGcugccgcggaaGUCGGCg -3'
miRNA:   3'- -GCGGCCGa-------------GcUGU-CUUGCGU-----------UAGCCG- -5'
8040 5' -55.5 NC_001973.1 + 138627 0.66 0.945037
Target:  5'- uGCaCGGCUgCGcCA--GCGCGggCGGCa -3'
miRNA:   3'- gCG-GCCGA-GCuGUcuUGCGUuaGCCG- -5'
8040 5' -55.5 NC_001973.1 + 136587 0.75 0.499357
Target:  5'- gCGCCGGCgCGACGcucagcucgucGGGCGCc-UCGGCg -3'
miRNA:   3'- -GCGGCCGaGCUGU-----------CUUGCGuuAGCCG- -5'
8040 5' -55.5 NC_001973.1 + 135910 0.76 0.471095
Target:  5'- gGCCGGacgaUCGucGCAGAGCGgGcgCGGCg -3'
miRNA:   3'- gCGGCCg---AGC--UGUCUUGCgUuaGCCG- -5'
8040 5' -55.5 NC_001973.1 + 134846 0.68 0.882609
Target:  5'- aGCUuacucuugGGCU-GGCAGAgcACGCAGccUCGGCc -3'
miRNA:   3'- gCGG--------CCGAgCUGUCU--UGCGUU--AGCCG- -5'
8040 5' -55.5 NC_001973.1 + 134101 0.66 0.935782
Target:  5'- gGCCaGGUUCGGCGGcACGUAgaaGUCGuCg -3'
miRNA:   3'- gCGG-CCGAGCUGUCuUGCGU---UAGCcG- -5'
8040 5' -55.5 NC_001973.1 + 133787 0.67 0.889431
Target:  5'- aCGgUGuGCUCGuCGGuGCGCAGguaCGGCg -3'
miRNA:   3'- -GCgGC-CGAGCuGUCuUGCGUUa--GCCG- -5'
8040 5' -55.5 NC_001973.1 + 133458 0.66 0.925593
Target:  5'- gCGCgCGGgUCGcgcACGGAGCGCcagCGGg -3'
miRNA:   3'- -GCG-GCCgAGC---UGUCUUGCGuuaGCCg -5'
8040 5' -55.5 NC_001973.1 + 133269 0.74 0.557936
Target:  5'- aGCuCGGcCUCGGCcgcggccgAGAACGCGGcCGGCg -3'
miRNA:   3'- gCG-GCC-GAGCUG--------UCUUGCGUUaGCCG- -5'
8040 5' -55.5 NC_001973.1 + 132847 0.67 0.907947
Target:  5'- aGCCGGCcagGAaGGAGCGCGAcauguccUCGGg -3'
miRNA:   3'- gCGGCCGag-CUgUCUUGCGUU-------AGCCg -5'
8040 5' -55.5 NC_001973.1 + 132538 0.7 0.747973
Target:  5'- cCGCCgGGCgcggCGGCGGGcucgaGCGCGG-CGGUg -3'
miRNA:   3'- -GCGG-CCGa---GCUGUCU-----UGCGUUaGCCG- -5'
8040 5' -55.5 NC_001973.1 + 130951 0.7 0.765975
Target:  5'- -cUCGaGCUCGGCGG-ACGCGuaagaucuuacgcGUCGGCg -3'
miRNA:   3'- gcGGC-CGAGCUGUCuUGCGU-------------UAGCCG- -5'
8040 5' -55.5 NC_001973.1 + 130872 0.69 0.811179
Target:  5'- -cUCGaGCUCGGCGG-ACGCGuaggauuuuacgcGUCGGCu -3'
miRNA:   3'- gcGGC-CGAGCUGUCuUGCGU-------------UAGCCG- -5'
8040 5' -55.5 NC_001973.1 + 130774 0.67 0.888759
Target:  5'- -cUCGaGCUCGGCGG-GCGCGuaggauuuuacgcGUCGGCc -3'
miRNA:   3'- gcGGC-CGAGCUGUCuUGCGU-------------UAGCCG- -5'
8040 5' -55.5 NC_001973.1 + 130696 0.69 0.844527
Target:  5'- -cUCGaGCUCGGCGG-ACGCGuaggauuuuacgcGUCGGCc -3'
miRNA:   3'- gcGGC-CGAGCUGUCuUGCGU-------------UAGCCG- -5'
8040 5' -55.5 NC_001973.1 + 130617 0.67 0.901149
Target:  5'- -aCCGaGCUCGGCGGAcGCGUAGgauuuuacgugcCGGCa -3'
miRNA:   3'- gcGGC-CGAGCUGUCU-UGCGUUa-----------GCCG- -5'
8040 5' -55.5 NC_001973.1 + 130539 0.72 0.647703
Target:  5'- -aCCGaGCUCGGCGG-ACGCGuaagauuuuacgcGUCGGCc -3'
miRNA:   3'- gcGGC-CGAGCUGUCuUGCGU-------------UAGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.